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双核镍配合物的尿素分解机理。

Urea Decomposition Mechanism by Dinuclear Nickel Complexes.

机构信息

Department of Chemistry, Universidade Federal de Sao Carlos, Rod. Washington Luiz, s/n, km 235, Sao Carlos 13565-905, Brazil.

Department of Chemical Engineering, Universidade Federal de Sao Carlos, Rod. Washington Luiz, s/n, km 235, Sao Carlos 13565-905, Brazil.

出版信息

Molecules. 2023 Feb 9;28(4):1659. doi: 10.3390/molecules28041659.

DOI:10.3390/molecules28041659
PMID:36838646
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9964345/
Abstract

Urease is an enzyme containing a dinuclear nickel active center responsible for the hydrolysis of urea into carbon dioxide and ammonia. Interestingly, inorganic models of urease are unable to mimic its mechanism despite their similarities to the enzyme active site. The reason behind the discrepancy in urea decomposition mechanisms between inorganic models and urease is still unknown. To evaluate this factor, we synthesized two -nickel complexes, [NiL(OAc)] (1) and [NiL(Cl)(EtN)] (2), based on the Trost -Pro-Phenol ligand (L) and encompassing different ligand labilities with coordination geometries similar to the active site of jack bean urease. Both mimetic complexes produced ammonia from urea, (1) and (2), were ten- and four-fold slower than urease, respectively. The presence and importance of several reaction intermediates were evaluated both experimentally and theoretically, indicating the aquo intermediate as a key intermediate, coordinating urea in an outer-sphere manner. Both complexes produced isocyanate, revealing an activated water molecule acting as a base. In addition, the reaction with different substrates indicated the biomimetic complexes were able to hydrolyze isocyanate. Thus, our results indicate that the formation of an outer-sphere complex in the urease analogues might be the reason urease performs a different mechanism.

摘要

脲酶是一种含有双核镍活性中心的酶,负责将尿素水解为二氧化碳和氨。有趣的是,尽管无机脲酶模型与酶的活性位点相似,但它们却无法模拟其机制。无机模型和脲酶之间在尿素分解机制上存在差异的原因尚不清楚。为了评估这一因素,我们基于 Trost-Pro-Phenol 配体 (L) 合成了两种双核配合物[NiL(OAc)] (1) 和 [NiL(Cl)(EtN)] (2),它们具有不同的配体稳定性,配位几何形状与 Jack bean 脲酶的活性位点相似。两种模拟配合物都能从尿素中产生氨,但 (1) 和 (2) 的反应速度分别比脲酶慢十倍和四倍。通过实验和理论评估了几种反应中间体的存在和重要性,表明水合中间体是一个关键的中间体,以外部配位的方式与尿素配位。两种配合物都产生异氰酸酯,表明活化水分子作为碱存在。此外,与不同底物的反应表明,仿生配合物能够水解异氰酸酯。因此,我们的结果表明,脲酶类似物中形成外部配合物可能是脲酶表现出不同机制的原因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/6819a2b498d9/molecules-28-01659-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/417f6e2813e1/molecules-28-01659-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/0618c1e16b09/molecules-28-01659-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/9d515d3dc378/molecules-28-01659-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/27858d04173b/molecules-28-01659-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/bce86850921b/molecules-28-01659-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/6819a2b498d9/molecules-28-01659-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/417f6e2813e1/molecules-28-01659-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/0618c1e16b09/molecules-28-01659-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/9d515d3dc378/molecules-28-01659-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/27858d04173b/molecules-28-01659-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/bce86850921b/molecules-28-01659-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5567/9964345/6819a2b498d9/molecules-28-01659-g007.jpg

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The structure-based reaction mechanism of urease, a nickel dependent enzyme: tale of a long debate.脲酶的基于结构的反应机制,一种镍依赖性酶:漫长争论的故事。
J Biol Inorg Chem. 2020 Sep;25(6):829-845. doi: 10.1007/s00775-020-01808-w. Epub 2020 Aug 18.
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J Am Chem Soc. 2020 Sep 2;142(35):14826-14830. doi: 10.1021/jacs.0c06909. Epub 2020 Aug 19.
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