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南非竹䇲鱼(Euphrasén,1791年)(鲈形目,蛇鲭科)的完整线粒体基因组。

The complete mitochondrial genome of the South African snoek (Euphrasén, 1791) (Perciformes, Gempylidae).

作者信息

Mthethwa Siphesihle, Bester-van der Merwe Aletta, Roodt-Wilding Rouvay

机构信息

Molecular Breeding and Biodiversity Group, Department of Genetics, Stellenbosch University, Stellenbosch, South Africa.

出版信息

Mitochondrial DNA B Resour. 2023 Feb 20;8(2):288-291. doi: 10.1080/23802359.2023.2179353. eCollection 2023.

DOI:10.1080/23802359.2023.2179353
PMID:36845005
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9946298/
Abstract

This is the first report on the complete mitochondrial genome (mitogenome) of South African (Euphrasén, 1791) and its phylogenetic placement within the Gempylidae family. The complete mitogenome of snoek is 16,494 bp in length and comprises 2 rRNAs, 13 protein-coding genes, 22 tRNAs, and one control region. Gene order is similar to that found in gempylids and other marine fishes. Reconstruction of Gempylidae phylogeny implies that the mitogenomes of snoek, black snoek , and snake mackerel, are closely related in evolutionary terms.

摘要

这是关于南非竹筴鱼(Euphrasén,1791)完整线粒体基因组(线粒体基因组)及其在蛇鲭科内系统发育位置的首次报告。竹筴鱼的完整线粒体基因组长度为16,494 bp,包含2个rRNA、13个蛋白质编码基因、22个tRNA和一个控制区。基因排列顺序与在蛇鲭科鱼类和其他海洋鱼类中发现的相似。蛇鲭科系统发育重建表明,从进化角度来看,竹筴鱼、黑竹筴鱼和蛇鲭的线粒体基因组密切相关。

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本文引用的文献

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Using SPAdes De Novo Assembler.使用 SPAdes 从头组装。
Curr Protoc Bioinformatics. 2020 Jun;70(1):e102. doi: 10.1002/cpbi.102.
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Characterization of the Whole Mitogenome of Largehead Hairtail Trichiurus lepturus (Trichiuridae): Insights into Special Characteristics.大头鱼(Trichiuridae)全基因组的特征分析:特殊特征的启示。
Biochem Genet. 2020 Jun;58(3):430-451. doi: 10.1007/s10528-020-09956-z. Epub 2020 Mar 13.
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A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean.一个关于大洋性鱼类(棘鳍鱼纲:鲈形目)的系统基因组框架,强调了开放海洋中的镶嵌辐射。
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BMC Evol Biol. 2017 Feb 6;17(1):42. doi: 10.1186/s12862-017-0890-6.
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