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有养鱼活动的泻湖沉积物中肠杆菌科细菌的多样性及抗生素耐药性分析

Diversity of enterobacterales in sediments of lagoons with fish farming activity and analysis of antibiotic resistance.

作者信息

Custodio María, Peñaloza Richard, Ordinola-Zapata Alberto, Peralta-Ortiz Tessy, Sánches-Suárez Héctor, Vieyra-Peña Enedia, De la Cruz Heidi, Alvarado-Ibáñez Juan

机构信息

Universidad Nacional del Centro del Perú, Facultad de Medicina Humana, Huancayo, Peru.

Universidad Nacional de Tumbes, Tumbes, Peru.

出版信息

Toxicol Rep. 2023 Feb 11;10:235-244. doi: 10.1016/j.toxrep.2023.02.002. eCollection 2023.

DOI:10.1016/j.toxrep.2023.02.002
PMID:36845256
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9950807/
Abstract

The use of antibiotics in fish production can induce bacterial populations to develop resistance to multiple antibiotics and transfer antibiotic resistance genes to other bacteria, including clinically relevant bacteria. This study evaluated the diversity of Enterobacterales in sediment from lagoons with fish farming activity and analyzed antibiotic resistance in the central region of Peru. Sediment samples were collected from four fish-active ponds and transported to the laboratory for analysis. Bacterial diversity was analyzed using DNA sequencing and antibiotic resistance was tested using the disk diffusion method. The results showed variability of bacterial diversity in the ponds with fish farming activity. Simpson's index indicated that the Habascocha lagoon is the most diverse in bacterial species of the order Enterobacterales (0.8), but the least dominant. The Shannon-Wiener index revealed that it is the most diverse (2.93) and the Margalef index revealed that species richness in this lagoon is high (5.72). Similarity percentage analysis (SIMPER) allowed the identification of the main Enterobacterales with the highest percentage contribution in the frequencies of individuals. In general, the Enterobacterales species isolated showed multi-resistance to the antibiotics used and was the most resistant.

摘要

在鱼类养殖中使用抗生素会促使细菌群体产生对多种抗生素的耐药性,并将抗生素耐药基因转移到其他细菌,包括临床相关细菌。本研究评估了有养鱼活动的泻湖沉积物中肠杆菌科细菌的多样性,并分析了秘鲁中部地区的抗生素耐药性。从四个养鱼池塘采集沉积物样本并运至实验室进行分析。使用DNA测序分析细菌多样性,使用纸片扩散法测试抗生素耐药性。结果显示,有养鱼活动的池塘中细菌多样性存在差异。辛普森指数表明,哈巴斯科查泻湖在肠杆菌科细菌种类方面最为多样(0.8),但优势度最低。香农 - 维纳指数显示其最为多样(2.93),而马加莱夫指数表明该泻湖的物种丰富度较高(5.72)。相似性百分比分析(SIMPER)能够识别出在个体频率中贡献百分比最高的主要肠杆菌科细菌。总体而言,分离出的肠杆菌科细菌对所用抗生素表现出多重耐药性,且耐药性最强。

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