Cullen Lucille E, Marchiori Alan, Rovnyak David
Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania, 17837, USA.
Department of Computer Science, Bucknell University, Lewisburg, Pennsylvania, 17837, USA.
Magn Reson Chem. 2023 Jun;61(6):337-344. doi: 10.1002/mrc.5340. Epub 2023 Mar 13.
A continuing priority is to better understand and resolve the barriers to using nonuniform sampling (NUS) in challenging small molecule 2D NMR with subsampling of the Nyquist grid (a.k.a. coverage) below 50%. Possible causes for artifacts, often termed sampling noise, in 1D-NUS of 2D-NMR are revisited here, where weak aliasing artifacts are a growing concern as NUS becomes sparser. As NUS schedules become sparser, repeat sequences are shown to occur in the dense sampling regions early in the sampling schedule, causing aliasing artifacts in resulting spectra. An intuitive screening approach that detects patterns in sampling schedules based on a convolutional filter was implemented. Sampling schedules that have low proportions of repeat sequences show significantly reduced artifacts. Another route to remediate early repeat sequences is a short period of uniform sampling at the beginning of the schedule, which also leads to a significant suppression of unwanted sampling noise. Combining the repeat sequence filter with a survey of HSQC and LR-HSQMBC experiments, it is shown that very short initial uniform regions of about 2%-4% of the sampling space can ameliorate repeat sequences in sparser NUS and lead to robust spectral reconstructions by iterative soft thresholding (IST), even when the point spread function is unchanged. Using the principles developed here, a suite of 'one-click' schedules was developed for broader use.
一个持续的重点是更好地理解并解决在具有低于50%的奈奎斯特网格子采样(即覆盖范围)的具有挑战性的小分子二维核磁共振中使用非均匀采样(NUS)的障碍。本文重新审视了二维核磁共振一维NUS中伪影(通常称为采样噪声)的可能原因,随着NUS变得更加稀疏,弱混叠伪影日益受到关注。随着NUS采样计划变得更加稀疏,重复序列会在采样计划早期的密集采样区域出现,从而在所得光谱中产生混叠伪影。实施了一种基于卷积滤波器检测采样计划中模式的直观筛选方法。重复序列比例低的采样计划显示出明显减少的伪影。补救早期重复序列的另一种方法是在采样计划开始时进行短时间的均匀采样,这也会显著抑制不需要的采样噪声。将重复序列滤波器与对HSQC和LR-HSQMBC实验的调查相结合,结果表明,即使点扩散函数不变,约占采样空间2%-4%的非常短的初始均匀区域也可以改善更稀疏NUS中的重复序列,并通过迭代软阈值化(IST)实现稳健的光谱重建。利用本文提出的原理,开发了一套“一键式”采样计划以供更广泛使用。