Darling William T P, Hyberts Sven G, Erdelyi Mate
Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden.
Center of Excellence for the Chemical Mechanisms of Life, Uppsala University, Uppsala, Sweden.
Magn Reson Chem. 2025 Jul;63(7):495-507. doi: 10.1002/mrc.5529. Epub 2025 May 16.
Non-uniform sampling (NUS) enables faster acquisition of NMR spectra. Concerns about spectral fidelity, particularly in high-dynamic-range experiments like NOESY, have limited its quantitative applications. In this study, we assessed whether optimised Poisson-gap sampling schemes can generate high-fidelity spectra suitable for quantitation and evaluated the effectiveness of NUS ranking tools, NUSscore and nus-tool, in identifying optimal sampling schemes. A total of 25,000 Poisson-gap sampling schemes were generated and ranked using NUSscore, with a subset of 11 of these spanning the score distribution, alongside 15 random-shuffle and the highest and lowest scoring Poisson-gap schemes determined using the signal apex-to-artefact ratio were used for comparison, all with 50% sampling coverage. Additionally, hybrid sampling schemes incorporating a long initial uniformly sampled section, termed US-NUS hybrid schemes, were evaluated. Spectral fidelity was evaluated on interproton distance accuracy, including the proportion of retained interproton distances and their deviation from uniformly sampled reference spectra. NUSscore showed a strong correlation with spectral fidelity. The peak-to-sidelobe ratio implemented in nus-tool showed no correlation, with the relative sensitivity metric showing a weak correlation. Signal-to-artefact apex ratio was also not predictive for identifying sampling schedules with maintained interproton distances. All Poisson-gap sampling schemes however outperformed random-shuffle. The US-NUS hybrids demonstrated improved interproton distance conservation than traditional Poisson-gap sampling schemes with a low seed dependence, making them a promising sampling schedule for quantitative NOESY analysis.
非均匀采样(NUS)能够更快地获取核磁共振(NMR)谱。对谱保真度的担忧,尤其是在诸如NOESY等高动态范围实验中,限制了其定量应用。在本研究中,我们评估了优化的泊松间隙采样方案是否能生成适用于定量分析的高保真谱,并评估了NUS排序工具NUSscore和nus - tool在识别最佳采样方案方面的有效性。总共生成了25000种泊松间隙采样方案,并使用NUSscore进行排序,其中11种方案涵盖了分数分布范围,同时还包括15种随机打乱的方案以及根据信号峰到伪影比率确定的最高和最低得分的泊松间隙方案用于比较,所有方案的采样覆盖率均为50%。此外,还评估了包含长初始均匀采样段的混合采样方案,即US - NUS混合方案。通过质子间距离准确性来评估谱保真度,包括保留的质子间距离的比例及其与均匀采样参考谱的偏差。NUSscore与谱保真度显示出很强的相关性。nus - tool中实现的峰旁瓣比没有相关性,相对灵敏度指标显示出弱相关性。信号到伪影峰比率对于识别保持质子间距离的采样方案也没有预测性。然而,所有泊松间隙采样方案均优于随机打乱的方案。US - NUS混合方案比传统泊松间隙采样方案在保持质子间距离方面表现更优,且对种子依赖性较低,使其成为定量NOESY分析中一种有前景的采样方案。