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转录组谱分析 Protaetia brevitarsis seulensis 的发育阶段,重点关注翅膀发育和变态。

Transcriptome profiling for developmental stages Protaetia brevitarsis seulensis with focus on wing development and metamorphosis.

机构信息

Department of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, Korea.

Phylomics Inc., Daegu, South Korea.

出版信息

PLoS One. 2023 Mar 1;18(3):e0277815. doi: 10.1371/journal.pone.0277815. eCollection 2023.

Abstract

A white-spotted flower chafer Protaetia brevitarsis seulensis widely distributed in Asian countries is traditionally used in oriental medicine. This study explored gene expression abundance with respect to wing development and metamorphosis in P. b. seulensis based on the large-scale RNA-seq data. The transcriptome assembly consists of 23,551 high-quality transcripts which are approximately 96.7% covered. We found 265 wing development genes, 19 metamorphosis genes, and 1,314 candidates. Of the 1,598 genes, 1,594 are included exclusively in cluster 4 with similar gene co-expression patterns. The network centrality analyses showed that wing development- and metamorphosis-related genes have a high degree of betweenness centrality and are expressed most highly in eggs, moderately in pupa and adults, and lowest in larva. This study provides some meaningful clues for elucidating the genetic modulation mechanism of wing development and metamorphosis in P. b. seulensis.

摘要

广泛分布于亚洲国家的白纹花金龟 Protaetia brevitarsis seulensis 是传统中药的一种。本研究基于大规模 RNA-seq 数据,探讨了 P. b. seulensis 翅膀发育和变态过程中的基因表达丰度。转录组组装包含 23551 条高质量转录本,约 96.7%被覆盖。我们发现了 265 个翅膀发育基因、19 个变态基因和 1314 个候选基因。其中,1598 个基因完全包含在具有相似基因共表达模式的簇 4 中。网络中心性分析表明,翅膀发育和变态相关基因具有较高的介数中心度,在卵中表达最高,在蛹和成虫中表达适中,在幼虫中表达最低。本研究为阐明 P. b. seulensis 翅膀发育和变态的遗传调控机制提供了一些有意义的线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/78a3/9977060/bbaec4405d34/pone.0277815.g001.jpg

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