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加拉帕戈斯海湾地区海鸥是产 CTX-M 型超广谱β-内酰胺酶大肠杆菌的重要储存宿主:基因组学证据。

Genomic evidences of gulls as reservoirs of critical priority CTX-M-producing Escherichia coli in Corcovado Gulf, Patagonia.

机构信息

Departamento de Patología y Medicina Preventiva, Facultad de Ciencias Veterinarias, Universidad de Concepción, Chillán, Chile; Department of Pathology, School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, Brazil.

Escuela de Medicina Veterinaria, Facultad de Recursos Naturales y Medicina Veterinaria, Universidad Santo Tomás, Talca, Chile.

出版信息

Sci Total Environ. 2023 May 20;874:162564. doi: 10.1016/j.scitotenv.2023.162564. Epub 2023 Mar 3.

DOI:10.1016/j.scitotenv.2023.162564
PMID:36870482
Abstract

Extended spectrum β-lactamase (ESBL)-producing Enterobacterales has spread rapidly around the world, reaching remote areas. In this regard, wild birds that acquire ESBL producers from anthropogenically impacted areas can become reservoirs, contributing to further dissemination of antimicrobial-resistant bacteria categorized as critical priority pathogens to remote environments, during migration seasons. We have conducted a microbiological and genomic investigation on the occurrence and features of ESBL-producing Enterobacterales in wild birds from the remote Acuy Island, in the Gulf of Corcovado, at Chilean Patagonia. Strikingly, five ESBL-producing Escherichia coli were isolated from migratory and resident gulls. Whole-genome sequencing (WGS) analysis revealed the presence of two E. coli clones belonging to international sequence types (STs) ST295 and ST388, producing CTX-M-55 and CTX-M-1 ESBLs, respectively. Moreover, E. coli carried a wide resistome and virulome associated with human and animal infections. Phylogenomic analysis of global and publicly genomes of E. coli ST388 (n = 51) and ST295 (n = 85) clustered gulls isolates along to E. coli strains isolated from the environment, companion animal and livestock in the United States of America, within or close to the migratory route of Franklin's gull, suggesting a possible trans hemispheric movement of international clones of WHO critical priority ESBL producing pathogens.

摘要

产超广谱β-内酰胺酶(ESBL)的肠杆菌科在世界各地迅速传播,甚至到达偏远地区。在这方面,从人为影响地区获得 ESBL 产生菌的野生鸟类可能成为储主,在迁徙季节,有助于将被归类为世界卫生组织(WHO)关键优先病原体的具有抗药性的细菌进一步传播到偏远环境中。我们对智利巴塔哥尼亚科尔多瓦湾偏远的阿库里岛的野生鸟类中 ESBL 产生的肠杆菌科的发生和特征进行了微生物学和基因组调查。引人注目的是,从迁徙和常驻海鸥中分离出了五株产 ESBL 的大肠杆菌。全基因组测序(WGS)分析显示,存在两种属于国际序列类型(ST)ST295 和 ST388 的大肠杆菌克隆,分别产生 CTX-M-55 和 CTX-M-1 ESBL。此外,大肠杆菌携带与人类和动物感染相关的广泛耐药基因组和毒力基因组。对全球和公开的大肠杆菌 ST388(n=51)和 ST295(n=85)基因组的系统发育分析将海鸥分离株与美国环境、伴侣动物和牲畜中分离出的大肠杆菌菌株聚类在一起,或靠近富兰克林海鸥的迁徙路线,表明具有抗药性的 WHO 关键优先 ESBL 产生病原体的国际克隆可能存在跨半球传播。

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