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基于网络药理学、分子对接和实验验证的水果混合物作用机制研究,通过 AGEs/RAGE 信号通路改善 DKD 的炎症反应。

Mechanistic Study of Fruit Mixture Based on Network Pharmacology, Molecular Docking and Experimental Validation to Improve the Inflammatory Response of DKD Through AGEs/RAGE Signaling Pathway.

机构信息

Department of Nephrology, Dongfang Hospital of Beijing University of Chinese Medicine, Beijing, People's Republic of China.

Department of Nephrology, Tianjin Academy of Traditional Chinese Medicine Affiliated Hospital, Tianjin, People's Republic of China.

出版信息

Drug Des Devel Ther. 2023 Feb 27;17:613-632. doi: 10.2147/DDDT.S395512. eCollection 2023.

Abstract

BACKGROUND

Diabetic kidney disease (DKD) is a major cause of end-stage renal disease (ESRD), and inflammation is the main causative mechanism. fruit Mixture (SM) is an herbal formulation that has been used for a long time to treat DKD. However, its pharmacological and molecular mechanisms have not been clearly elucidated. The aim of this study was to investigate the potential mechanisms of SM for the treatment of DKD through network pharmacology, molecular docking and experimental validation.

METHODS

The chemical components in SM were comprehensively identified and collected using liquid chromatography-tandem mass spectrometry (LC-MS) and database mining. The mechanisms were investigated using a network pharmacology, including obtaining SM-DKD intersection targets, completing protein-protein interactions (PPI) by Cytoscape to obtain key potential targets, and then revealing potential mechanisms of SM for DKD by GO and KEGG pathway enrichment analysis. The important pathways and phenotypes screened by the network analysis were validated experimentally in vivo. Finally, the core active ingredients were screened by molecular docking.

RESULTS

A total of 53 active ingredients of SM were retrieved by database and LC-MS, and 143 common targets of DKD and SM were identified; KEGG and PPI showed that SM most likely exerted anti-DKD effects by regulating the expression of AGEs/RAGE signaling pathway-related inflammatory factors. In addition, our experimental validation results showed that SM improved renal function and pathological changes in DKD rats, down-regulated AGEs/RAGE signaling pathway, and further down-regulated the expression of TNF-α, IL-1β, IL-6, and up-regulated IL-10. Molecular docking confirmed the tight binding properties between (+)-aristolone, a core component of SM, and key targets.

CONCLUSION

This study reveals that SM improves the inflammatory response of DKD through AGEs/RAGE signaling pathway, thus providing a novel idea for the clinical treatment of DKD.

摘要

背景

糖尿病肾病(DKD)是终末期肾病(ESRD)的主要病因,炎症是主要发病机制。复方水果(SM)是一种草药配方,长期以来一直用于治疗 DKD。然而,其药理和分子机制尚未得到明确阐明。本研究旨在通过网络药理学、分子对接和实验验证来研究 SM 治疗 DKD 的潜在机制。

方法

采用液相色谱-串联质谱(LC-MS)和数据库挖掘技术,全面鉴定和收集 SM 中的化学成分。利用网络药理学研究其机制,包括获得 SM-DKD 交集靶点,通过 Cytoscape 完成蛋白质-蛋白质相互作用(PPI),获得关键潜在靶点,然后通过 GO 和 KEGG 通路富集分析揭示 SM 治疗 DKD 的潜在机制。通过网络分析筛选出重要的通路和表型,并在体内进行实验验证。最后,通过分子对接筛选出核心活性成分。

结果

通过数据库和 LC-MS 共检索到 SM 的 53 种活性成分,鉴定出 143 个 DKD 和 SM 的共同靶点;KEGG 和 PPI 表明,SM 可能通过调节 AGEs/RAGE 信号通路相关炎症因子的表达来发挥抗 DKD 作用。此外,我们的实验验证结果表明,SM 改善了 DKD 大鼠的肾功能和病理变化,下调了 AGEs/RAGE 信号通路,进一步下调了 TNF-α、IL-1β、IL-6 的表达,上调了 IL-10。分子对接证实了(+)-aristolone 等 SM 核心成分与关键靶点之间的紧密结合特性。

结论

本研究揭示了 SM 通过 AGEs/RAGE 信号通路改善 DKD 的炎症反应,为 DKD 的临床治疗提供了新的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76c1/9983444/c5fd925fa5a8/DDDT-17-613-g0001.jpg

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