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牦牛睾丸发育过程中 mRNAs、lncRNAs 和 circRNAs 的全基因组景观

Genome-Wide Landscape of mRNAs, lncRNAs, and circRNAs during Testicular Development of Yak.

机构信息

Animal Science Department, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.

Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.

出版信息

Int J Mol Sci. 2023 Feb 23;24(5):4420. doi: 10.3390/ijms24054420.

Abstract

Testicular development is a tightly regulated process in mammals. Understanding the molecular mechanisms of yak testicular development will benefit the yak breeding industry. However, the roles of different RNAs, such as mRNA, lncRNA, and circRNA in the testicular development of yak, are still largely unclear. In this study, transcriptome analyses were performed on the expression profiles of mRNAs, lncRNAs, and circRNAs in testis tissues of Ashidan yak at different developmental stages, including 6-months-old (M6), 18-months-old (M18), and 30-months-old (M30). A total of 30, 23, and 277 common differentially expressed (DE) mRNAs, lncRNAs, and circRNAs were identified in M6, M18, and M30, respectively. Furthermore, functional enrichment analysis showed that the common DE mRNAs during the entire developmental process were mainly involved in gonadal mesoderm development, cell differentiation, and spermatogenesis processes. Additionally, co-expression network analysis identified the potential lncRNAs related to spermatogenesis, e.g., TCONS_00087394 and TCONS_00012202. Our study provides new information about changes in RNA expression during yak testicular development, which greatly improves our understanding of the molecular mechanisms regulating testicular development in yaks.

摘要

睾丸发育是哺乳动物中一个受到严格调控的过程。了解牦牛睾丸发育的分子机制将有益于牦牛养殖业。然而,不同 RNA(如 mRNA、lncRNA 和 circRNA)在牦牛睾丸发育中的作用在很大程度上仍不清楚。在这项研究中,我们对不同发育阶段(6 月龄(M6)、18 月龄(M18)和 30 月龄(M30))的牦牛睾丸组织中的 mRNAs、lncRNAs 和 circRNAs 的表达谱进行了转录组分析。在 M6、M18 和 M30 中分别鉴定出了 30、23 和 277 个共同差异表达(DE)的 mRNAs、lncRNAs 和 circRNAs。此外,功能富集分析表明,整个发育过程中的共同 DE mRNAs 主要参与了性腺中胚层发育、细胞分化和精子发生过程。此外,共表达网络分析鉴定出了与精子发生相关的潜在 lncRNA,例如 TCONS_00087394 和 TCONS_00012202。我们的研究为牦牛睾丸发育过程中 RNA 表达变化提供了新的信息,这极大地提高了我们对调控牦牛睾丸发育的分子机制的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d2ec/10002557/0dcc18470b77/ijms-24-04420-g001.jpg

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