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牦牛泌乳期和干奶期乳腺组织中环状RNA的鉴定与分析

Identification and Analysis of Circular RNAs in Mammary Gland from Yaks Between Lactation and Dry Period.

作者信息

Shi Yilin, Wu Xiaoyun, Meng Guangyao, Ma Xiaoming, La Yongfu, Bao Pengjia, Chu Min, Yan Ping

机构信息

Key Laboratory of Yak Breeding of Gansu Province, Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences, Lanzhou 730050, China.

Key Laboratory of Animal Genetics and Breeding on Tibetan Plateau, Ministry of Agriculture and Rural Affairs, Lanzhou 730050, China.

出版信息

Animals (Basel). 2025 Jan 3;15(1):89. doi: 10.3390/ani15010089.

Abstract

Lactation is a complex physiological process regulated by numerous genes and factors. Circular RNA (circRNA), a non-coding RNA, acts as a molecular sponge that sequesters microRNAs (miRNAs) to regulate target gene expression. Although circRNA has been linked to mammary gland lactation, its specific role in yaks remains underexplored. This study employed circular RNA sequencing (circRNA-seq) to examine the differential expression of circRNAs in yak mammary tissues during lactation and the dry period. Additionally, an enrichment analysis of the differentially expressed circRNAs (DECs) was performed. A competing endogenous RNA (ceRNA) network was then constructed to explore the potential of their roles in lactation and mammary gland development. We detected 18,905 circRNAs in yak mammary tissue, among which 302 showed differential expression. The host genes of these DECs were enriched in functions and pathways associated with yak milk synthesis and composition. Through the construction of a ceRNA network and the enrichment analysis of associated mRNAs, this study identified ceRNAs potentially involved in regulating lactation and mammary gland development. In conclusion, circRNAs in yak mammary tissues were identified and analyzed across lactation and dry periods, establishing a ceRNA network related to lactation regulation. These findings provide novel insights into the regulatory mechanisms governing lactation in yaks ().

摘要

泌乳是一个由众多基因和因子调控的复杂生理过程。环状RNA(circRNA)作为一种非编码RNA,充当分子海绵,隔离微小RNA(miRNA)以调控靶基因表达。尽管circRNA已被证明与乳腺泌乳有关,但其在牦牛中的具体作用仍未得到充分研究。本研究采用环状RNA测序(circRNA-seq)技术,检测泌乳期和干奶期牦牛乳腺组织中circRNA的差异表达。此外,还对差异表达的circRNA(DEC)进行了富集分析。随后构建了竞争性内源RNA(ceRNA)网络,以探索它们在泌乳和乳腺发育中的潜在作用。我们在牦牛乳腺组织中检测到18905个circRNA,其中302个表现出差异表达。这些DEC的宿主基因在与牦牛奶合成和成分相关的功能和途径中富集。通过构建ceRNA网络和对相关mRNA进行富集分析,本研究鉴定出了可能参与调控泌乳和乳腺发育的ceRNA。总之,本研究对牦牛乳腺组织在泌乳期和干奶期的circRNA进行了鉴定和分析,建立了一个与泌乳调控相关的ceRNA网络。这些发现为牦牛泌乳调控机制提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3d26/11718809/8c534ed6be3c/animals-15-00089-g001.jpg

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