Key Laboratory of Plant Genetics and Breeding, Sichuan Agricultural University of Sichuan Province, Chengdu 611130, China.
College of Forestry, Sichuan Agricultural University, Chengdu 611130, China.
Int J Mol Sci. 2023 Mar 4;24(5):4973. doi: 10.3390/ijms24054973.
As a kind of plant-specific transcription factor (TF), DNA-Binding One Zinc Finger (Dof) is widely involved in the response to environmental change, and as an evolutionarily important perennial plant species, is ideal for studying environmental adaptation. In this study, a total of 41 were identified in the genome. First, the characteristics, including the length, exon number, and chromosomal distribution of the and the isoelectric point (PI), amino acid number, molecular weight (MW), and conserved motifs of their putative proteins, were reported. Second, we found that all evolutionarily underwent strong purifying selection, and many (33, 80.5%) of them were generated by whole-genome duplication (WGD). Third, we outlined their expression profiles by the use of available transcriptomic data and RT-qPCR analysis. Finally, we identified four candidate genes (, , , and ) and three other candidate genes (, , and ) that respond to long day (LD) and darkness, respectively, and that are closely associated with phytohormone-regulating pathways. Overall, this research is the first to identify and characterize the family and is very helpful for further research on adaptation to environmental factors, especially photoperiod changes.
作为一种植物特异性转录因子(TF),DNA 结合一个锌指(Dof)广泛参与环境变化的响应,并且作为一种进化上重要的多年生植物物种,非常适合研究环境适应。在这项研究中,总共在 基因组中鉴定出了 41 个 。首先,报告了 的特征,包括长度、外显子数和染色体分布,以及它们假定蛋白的等电点(PI)、氨基酸数、分子量(MW)和保守基序。其次,我们发现所有的 都经历了强烈的纯化选择,其中许多(33,80.5%)是由全基因组复制(WGD)产生的。第三,我们利用可用的转录组数据和 RT-qPCR 分析概述了它们的表达谱。最后,我们鉴定了四个候选基因( 、 、 、 )和三个其他候选基因( 、 、 ),它们分别对长日(LD)和黑暗有反应,并且与植物激素调节途径密切相关。总的来说,这项研究首次鉴定和描述了 家族,这对于进一步研究 适应环境因素,特别是光周期变化非常有帮助。