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猕猴桃基因家族的全基因组鉴定及其对干旱胁迫响应的功能验证。

Genome-Wide Identification of the Gene Family in Kiwifruit () and Functional Validation of in Response to Drought Stress.

机构信息

Biotechnology Laboratory, Shijiazhuang Institute of Pomology, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang 05000, China.

出版信息

Int J Mol Sci. 2024 Aug 22;25(16):9103. doi: 10.3390/ijms25169103.

Abstract

DNA-binding one zinc finger (DOF) transcription factors are crucial plant-specific regulators involved in growth, development, signal transduction, and abiotic stress response generation. However, the genome-wide identification and characterization of genes and their regulatory elements in kiwifruit () has not been thoroughly investigated. In this study, we screened the kiwifruit genome database and identified 42 genes ( to ). Phylogenetic analysis facilitated the categorization of these genes into five subfamilies (-a, -b, -c, -d, and -e). We further analyzed the motifs, conserved domains, gene structures, and collinearity of the gene family. Gene ontology (GO) enrichment analysis indicated significant enrichment in the "flower development" term and the "response to abiotic stress" category. Promoter prediction analysis revealed numerous cis-regulatory elements related to responses to light, hormones, and low-temperature and drought stress in promoters. RNA-seq expression profiles demonstrated the tissue-specific expression of genes. Quantitative real-time PCR results showed that six selected genes (, , , , , and ) were differentially induced by abscisic acid (ABA), methyl jasmonate (MeJA), and cold, salt, and drought stresses, with specifically expressed at high levels in drought-tolerant cultivars. Further experiments indicated that transient overexpression in kiwifruit leaf disks reduced water loss and chlorophyll degradation. Additionally, was localized to the nucleus and exhibited transcriptional activation, enhancing drought resistance by activating the downstream drought marker gene . These findings lay the foundation for elucidating the molecular mechanisms of drought resistance in kiwifruit and offer new insights into drought-resistant breeding.

摘要

DNA 结合锌指(DOF)转录因子是参与生长、发育、信号转导和非生物胁迫响应产生的关键植物特异性调控因子。然而,猕猴桃()基因组中基因及其调控元件的全基因组鉴定和特征尚未得到深入研究。在本研究中,我们筛选了猕猴桃基因组数据库,鉴定了 42 个基因(至)。系统发育分析有助于将这些基因分为五个亚家族(-a、-b、-c、-d 和 -e)。我们进一步分析了基因家族的基序、保守结构域、基因结构和共线性。基因本体(GO)富集分析表明,“花发育”术语和“非生物胁迫响应”类别显著富集。启动子预测分析显示,在 启动子中存在大量与光、激素、低温和干旱胁迫响应相关的顺式调控元件。RNA-seq 表达谱显示了 基因的组织特异性表达。定量实时 PCR 结果表明,六个选定基因(、、、、和)对脱落酸(ABA)、茉莉酸甲酯(MeJA)和冷、盐和干旱胁迫有差异诱导,其中在耐旱品种中高表达。进一步的实验表明,猕猴桃叶片瞬时过表达 可减少水分流失和叶绿素降解。此外,定位于细胞核并表现出转录激活,通过激活下游干旱标记基因 增强耐旱性。这些发现为阐明猕猴桃抗旱的分子机制奠定了基础,并为抗旱育种提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3976/11354610/17e9b2328848/ijms-25-09103-g001.jpg

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