Department of Microbiology, Aichi Gakuin University, School of Pharmacy,, 1-100 Kusumoto-cho, Nagoya, Aichi 464-8650, Japan.
Department of Microbiology, Graduate School of Medical Sciences, Kumamoto University, 1-1-1 Honjou, Kumamoto, Kumamoto 860-8556, Japan.
Int J Syst Evol Microbiol. 2023 Mar;73(3). doi: 10.1099/ijsem.0.005732.
A Gram-stain-negative, spiral bacterium (PAGU 1991) was isolated from the blood of a patient with diffuse large B-cell lymphoma. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate was very closely related to LMG 23362 (99.1 % similarity), originally isolated from a faecal sample from a healthy horse. PAGU 1991 was also very closely related to PAGU 1750 in our strain library (=CCUG 41437) with 99.7 % similarity. Additional phylogenetic analyses based on the 23S rRNA gene sequence and GyrA amino acid sequence further supported the close relationship between the two human isolates (PAGU 1991 and PAGU 1750) and the horse strain. However, a phylogenetic analysis based on 16S rRNA showed that the two human isolates formed a lineage that was distinct from the horse strain (less than 99.2 % similarity). whole-genome comparisons based on digital DNA-DNA hybridization, average nucleotide identity based on blast and orthologous average nucleotide identity using usearch between the two human isolates and the type strain of showed values of less than 52.40, 93.47, and 93.50 %, respectively, whereas those between the two human isolates were 75.8, 97.2, and 97.2 %, respectively. These data clearly demonstrated that the two human isolates formed a single species, distinct from . Morphologically, the human isolates could be distinguished by the type of flagella; the human isolates showed a bipolar sheathed flagellum, whereas that of was monopolar. Biochemically, the human isolate was characterized by growth at 42 °C under microaerobic conditions and nitrate reduction unability. We conclude that the two human isolates, obtained from geographically and temporally distinct sources, were a novel species, for which we propose the name sp. nov., with the type strain PAGU 1991 (=GTC 16810=CCUG 75774).
一株革兰氏阴性、螺旋状细菌(PAGU 1991)从一名弥漫性大 B 细胞淋巴瘤患者的血液中分离得到。基于 16S rRNA 基因序列的系统发育分析表明,该分离株与最初从一匹健康马粪便样本中分离到的 LMG 23362 (99.1%相似度)非常密切相关。PAGU 1991 与我们的菌株库中的 PAGU 1750 (=CCUG 41437)也非常密切相关,相似度为 99.7%。基于 23S rRNA 基因序列和 GyrA 氨基酸序列的额外系统发育分析进一步支持了这两个人类分离株(PAGU 1991 和 PAGU 1750)与马株之间的密切关系。然而,基于 16S rRNA 的系统发育分析表明,这两个人类分离株形成了一个与马株不同的谱系(相似度低于 99.2%)。基于数字 DNA-DNA 杂交的全基因组比较、blast 基于平均核苷酸同一性和 usearch 基于同源平均核苷酸同一性的比较表明,这两个人类分离株与 型菌株之间的值分别小于 52.40、93.47 和 93.50%,而这两个人类分离株之间的值分别为 75.8、97.2 和 97.2%。这些数据清楚地表明,这两个人类分离株形成了一个单一的物种,与 不同。形态上,人类分离株可以通过鞭毛的类型来区分;人类分离株表现出双极鞘鞭毛,而 的鞭毛是单极的。生物化学上,人类分离株的特点是在微需氧条件下 42°C 生长和硝酸盐还原能力丧失。我们得出结论,这两个从地理位置和时间上不同来源获得的人类分离株是一个新的物种,我们建议将其命名为 sp. nov.,其模式菌株为 PAGU 1991(=GTC 16810=CCUG 75774)。