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斯皮尔斯纪念演讲:屏蔽活性部位:作为不对称转移氢化主蛋白的链霉亲和素超氧化物歧化酶嵌合体。

Spiers Memorial Lecture: Shielding the active site: a streptavidin superoxide-dismutase chimera as a host protein for asymmetric transfer hydrogenation.

机构信息

Department of Chemistry, University of Basel, Mattenstrasse 24a, BPR 1096, Basel, CH-4058, Switzerland.

National Center of Competence in Research (NCCR) "Molecular Systems Engineering", 4058 Basel, Switzerland.

出版信息

Faraday Discuss. 2023 Aug 11;244(0):9-20. doi: 10.1039/d3fd00034f.

DOI:10.1039/d3fd00034f
PMID:36924204
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10416703/
Abstract

By anchoring a metal cofactor within a host protein, so-called artificial metalloenzymes can be generated. Such hybrid catalysts combine the versatility of transition metals in catalyzing new-to-nature reactions with the power of genetic-engineering to evolve proteins. With the aim of gaining better control over second coordination-sphere interactions between a streptavidin host-protein (Sav) and a biotinylated cofactor, we engineered a hydrophobic dimerization domain, borrowed from superoxide dismutase C (SOD), on Sav's biotin-binding vestibule. The influence of the SOD dimerization domain (DD) on the performance of an asymmetric transfer hydrogenase (ATHase) resulting from anchoring a biotinylated CpIr-cofactor - [CpIr(biot--L)Cl] (1-Cl) - within Sav-SOD is reported herein. We show that, depending on the nature of the residue at position Sav S112, the introduction of the SOD DD on the biotin-binding vestibule leads to an inversion of configuration of the reduction product, as well as a fivefold increase in catalytic efficiency. The findings are rationalized by QM/MM calculations, combined with X-ray crystallography.

摘要

通过将金属辅因子锚定在宿主蛋白内,可以生成所谓的人工金属酶。这种杂交催化剂将过渡金属在催化新的天然反应中的多功能性与遗传工程进化蛋白质的能力结合在一起。为了更好地控制链霉亲和素宿主蛋白 (Sav) 和生物素化辅因子之间的第二配位球相互作用,我们在 Sav 的生物素结合前庭设计了一个疏水二聚化结构域,该结构域来自超氧化物歧化酶 C (SOD)。本文报道了在 Sav-SOD 内锚定生物素化 CpIr 辅因子-[CpIr(biot--L)Cl](1-Cl)后,SOD 二聚化结构域 (DD) 对不对称转移氢化酶 (ATHase) 性能的影响。我们表明,根据 Sav S112 位置上残基的性质,在生物素结合前庭上引入 SOD DD 会导致还原产物的构型反转,以及催化效率提高五倍。通过结合 X 射线晶体学的 QM/MM 计算对这些发现进行了合理化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/ea2afcdca84e/d3fd00034f-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/4153693ba561/d3fd00034f-s1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/bcf0dcb6e6f5/d3fd00034f-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/dd517c2c4bab/d3fd00034f-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/2e19fea1ec50/d3fd00034f-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/ea2afcdca84e/d3fd00034f-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/4153693ba561/d3fd00034f-s1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/bcf0dcb6e6f5/d3fd00034f-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/dd517c2c4bab/d3fd00034f-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/2e19fea1ec50/d3fd00034f-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc48/10416703/ea2afcdca84e/d3fd00034f-f4.jpg

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本文引用的文献

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J Am Chem Soc. 2020 Jun 17;142(24):10617-10623. doi: 10.1021/jacs.0c02788. Epub 2020 Jun 3.
2
Breaking Symmetry: Engineering Single-Chain Dimeric Streptavidin as Host for Artificial Metalloenzymes.打破对称:工程单链二聚体链霉亲和素作为人工金属酶的主体。
J Am Chem Soc. 2019 Oct 9;141(40):15869-15878. doi: 10.1021/jacs.9b06923. Epub 2019 Sep 25.
3
Hemoproteins Reconstituted with Artificial Metal Complexes as Biohybrid Catalysts.
血红素蛋白与人工金属配合物的重组作为生物杂交催化剂。
Acc Chem Res. 2019 Apr 16;52(4):945-954. doi: 10.1021/acs.accounts.8b00676. Epub 2019 Apr 1.
4
Asymmetric δ-Lactam Synthesis with a Monomeric Streptavidin Artificial Metalloenzyme.具有单体链霉亲和素人工金属酶的不对称 δ-内酰胺合成。
J Am Chem Soc. 2019 Mar 27;141(12):4815-4819. doi: 10.1021/jacs.9b01596. Epub 2019 Mar 13.
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Beyond the Second Coordination Sphere: Engineering Dirhodium Artificial Metalloenzymes To Enable Protein Control of Transition Metal Catalysis.超越第二配位层:工程化双铑人工金属酶以实现过渡金属催化的蛋白质控制。
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