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基于 PANoptosis 相关基因和肿瘤微环境浸润特征的低级别胶质瘤分子亚型。

Molecular subtypes based on PANoptosis-related genes and tumor microenvironment infiltration characteristics in lower-grade glioma.

机构信息

Department of Neurosurgery, Neurosurgery Centre, the First Affiliated Hospital of Xinjiang Medical University, No. 137, South Liyushan Road, Xinshi District, Urumqi, Xinjiang, 830054, China.

Xinjiang Medical University, Urumqi, Xinjiang, 830054, China.

出版信息

Funct Integr Genomics. 2023 Mar 17;23(2):84. doi: 10.1007/s10142-023-01003-5.

Abstract

The growth of cancer, the effectiveness of treatment, and prognosis are all closely related to PANoptosis (include pyroptosis, apoptosis, and necroptosis). It remains unclear whether PANoptosis genes (PANGs) may contribute to lower-grade glioma (LGG) tumor microenvironment (TME). In this study, we collected 1203 LGG samples from three public databases and reported that PANoptosis involves TME interaction and prognosis. Firstly, we provided a comprehensive review of the pan-cancer landscape of PANGs in terms of expression characteristics, prognostic value, mutational profile, and pathway regulation. Then, we identified two distinct PANclusters, each with its own molecular, clinical, and immunological profile. We then developed a scoring system for LGG patients called PANscore. As well as investigating immune characteristics, tumor mutational characteristics, and drug sensitivity, we examined the differences between groups with high PANscores and those with low PANscores. Based on this PANscore and clinicopathological variables, an instant nomogram for predicting clinical survival in LGG patients was developed. Our thorough examination of PANGs in LGG revealed their probable function in TME, as well as their clinicopathological characteristics and prognosis. These discoveries could deepen our comprehension of PANGs in LGG and provide doctors fresh perspectives on how to forecast prognosis and create more efficient, individualized treatment plans.

摘要

癌症的生长、治疗效果和预后都与 PANoptosis(包括细胞焦亡、细胞凋亡和细胞坏死性凋亡)密切相关。PANoptosis 基因(PANGs)是否有助于低级别胶质瘤(LGG)肿瘤微环境(TME)尚不清楚。在这项研究中,我们从三个公共数据库中收集了 1203 个 LGG 样本,并报告了 PANoptosis 涉及 TME 相互作用和预后。首先,我们全面回顾了 PANGs 在表达特征、预后价值、突变谱和通路调节方面的泛癌景观。然后,我们确定了两个不同的 PANclusters,每个都有其自身的分子、临床和免疫学特征。然后,我们为 LGG 患者开发了一个称为 PANscore 的评分系统。除了研究免疫特征、肿瘤突变特征和药物敏感性外,我们还研究了高 PANscore 组和低 PANscore 组之间的差异。基于这个 PANscore 和临床病理变量,我们为 LGG 患者开发了一个即时预测临床生存的列线图。我们对 LGG 中 PANGs 的全面研究揭示了它们在 TME 中的可能功能,以及它们的临床病理特征和预后。这些发现可以加深我们对 LGG 中 PANGs 的理解,并为医生提供预测预后和制定更有效、个体化治疗方案的新视角。

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