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协同无土介质提高作物产量:迈向利用基因组工具实现零饥饿目标的一步。

Synergistic soil-less medium for enhanced yield of crops: a step towards incorporating genomic tools for attaining net zero hunger.

机构信息

Faculty of Applied Sciences and Biotechnology, Shoolini University of Biotechnology and Management Sciences, Solan, HP, India.

Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Lucknow, 226028, U.P, India.

出版信息

Funct Integr Genomics. 2023 Mar 17;23(2):86. doi: 10.1007/s10142-023-01018-y.

Abstract

Globally, industrial farming endangers crucial ecological mechanisms upon which food production relies, while 815 million people are undernourished and a significant number are malnourished. Zero Hunger aims to concurrently solve global ecological sustainability and food security concerns. Recent breakthroughs in molecular tools and approaches have allowed scientists to detect and comprehend the nature and structure of agro-biodiversity at the molecular and genetic levels, providing us an advantage over traditional methods of crop breeding. These bioinformatics techniques let us optimize our target plants for our soil-less medium and vice versa. Most of the soil-borne and seed-borne diseases are the outcomes of non-treated seed and growth media, which are important factors in low productivity. The farmers do not consider these issues, thereby facing problems growing healthy crops and suffering economic losses. This study is going to help the farmers increase their eco-friendly, chemical residue-free, quality yield of crops and their economic returns. The present invention discloses a synergistic soil-less medium that consists of only four ingredients mixed in optimal ratios by weight: vermicompost (70-80%), vermiculite (10-15%), coco peat (10-15%), and Rhizobium (0-1%). The medium exhibits better physical and chemical characteristics than existing conventional media. The vermiculite to coco peat ratio is reduced, while the vermicompost ratio is increased, with the goals of lowering toxicity, increasing plant and water holding capacity, avoiding drying of the media, and conserving water. The medium provides balanced nutrition and proper ventilation for seed germination and the growth of seedlings. Rhizobium is also used to treat the plastic bags and seeds. The results clearly show that the current synergistic soil-less environment is best for complete plant growth. Securing genetic advantages via sexual recombination, induced random mutations, and transgenic techniques have been essential for the development of improved agricultural varieties. The recent availability of targeted genome-editing technology provides a new path for integrating beneficial genetic modifications into the most significant agricultural species on the planet. Clustered regularly interspaced short palindromic repeats and associated protein 9 (CRISPR/Cas9) has evolved into a potent genome-editing tool for imparting genetic modifications to crop species. In addition, the integration of analytical methods like population genomics, phylogenomics, and metagenomics addresses conservation problems, while whole genome sequencing has opened up a new dimension for explaining the genome architecture and its interactions with other species. The in silico genomic and proteomic investigation was also conducted to forecast future investigations for the growth of French beans on a synergistic soil-less medium with the purpose of studying how a blend of vermicompost, vermiculite, cocopeat, and Rhizobium secrete metal ions, and other chemical compounds into the soil-less medium and affect the development of our target plant as well as several other plants. This interaction was studied using functional and conserved region analysis, phylogenetic analysis, and docking tools.

摘要

全球范围内,工业化农业危及到粮食生产所依赖的关键生态机制,而仍有 8.15 亿人营养不良,大量人口营养不足。零饥饿旨在同时解决全球生态可持续性和粮食安全问题。近年来,分子工具和方法的突破使科学家能够在分子和遗传水平上检测和理解农业生物多样性的性质和结构,为我们提供了优于传统作物育种方法的优势。这些生物信息学技术使我们能够优化我们的目标植物,使其适应无土介质,反之亦然。大多数土传和种传疾病都是未经处理的种子和生长介质的结果,这也是生产力低下的重要因素。农民没有考虑到这些问题,因此在种植健康作物和遭受经济损失方面面临问题。本研究将帮助农民提高他们的生态友好型、无化学残留、高质量的作物产量和经济回报。本发明公开了一种协同无土介质,仅由四种成分按重量最佳比例混合而成:蚯蚓粪(70-80%)、蛭石(10-15%)、椰糠(10-15%)和根瘤菌(0-1%)。该介质的物理和化学特性优于现有常规介质。减少了蛭石与椰糠的比例,增加了蚯蚓粪的比例,目的是降低毒性、增加植物和保水能力、避免介质干燥和节约用水。该介质为种子发芽和幼苗生长提供了均衡的营养和适当的通风。根瘤菌也用于处理塑料袋和种子。结果清楚地表明,目前的协同无土环境最适合植物的完全生长。通过有性重组、诱导随机突变和转基因技术获得遗传优势,一直是改良农业品种发展的关键。最近靶向基因组编辑技术的出现为将有益的遗传修饰整合到地球上最重要的农业物种中提供了新途径。成簇规律间隔短回文重复序列和相关蛋白 9(CRISPR/Cas9)已成为赋予作物物种遗传修饰的有效基因组编辑工具。此外,整合种群基因组学、系统发生基因组学和宏基因组学等分析方法解决了保护问题,而全基因组测序为解释基因组结构及其与其他物种的相互作用开辟了新的维度。还进行了基于计算机的基因组和蛋白质组学研究,以预测在协同无土介质上种植法国豆的未来研究,目的是研究蚯蚓粪、蛭石、椰糠和根瘤菌如何将金属离子和其他化学化合物分泌到无土介质中,并影响我们的目标植物以及其他几种植物的发育。使用功能和保守区分析、系统发生分析和对接工具研究了这种相互作用。

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