影响 Tat-TAR 结合亲和力的 HIV-1 Tat 氨基酸残基:范围综述。
HIV-1 Tat amino acid residues that influence Tat-TAR binding affinity: a scoping review.
机构信息
Human Metabolomics, North-West University, Potchefstroom, South Africa.
出版信息
BMC Infect Dis. 2023 Mar 17;23(1):164. doi: 10.1186/s12879-023-08123-0.
HIV-1 remains a global health concern and to date, nearly 38 million people are living with HIV. The complexity of HIV-1 pathogenesis and its subsequent prevalence is influenced by several factors including the HIV-1 subtype. HIV-1 subtype variation extends to sequence variation in the amino acids of the HIV-1 viral proteins. Of particular interest is the transactivation of transcription (Tat) protein due to its key function in viral transcription. The Tat protein predominantly functions by binding to the transactivation response (TAR) RNA element to activate HIV-1 transcriptional elongation. Subtype-specific Tat protein sequence variation influences Tat-TAR binding affinity. Despite several studies investigating Tat-TAR binding, it is not clear which regions of the Tat protein and/or individual Tat amino acid residues may contribute to TAR binding affinity. We, therefore, conducted a scoping review on studies investigating Tat-TAR binding. We aimed to synthesize the published data to determine (1) the regions of the Tat protein that may be involved in TAR binding, (2) key Tat amino acids involved in TAR binding and (3) if Tat subtype-specific variation influences TAR binding. A total of thirteen studies met our inclusion criteria and the key findings were that (1) both N-terminal and C-terminal amino acids outside the basic domain (47-59) may be important in increasing Tat-TAR binding affinity, (2) substitution of the amino acids Lysine and Arginine (47-59) resulted in a reduction in binding affinity to TAR, and (3) none of the included studies have investigated Tat subtype-specific substitutions and therefore no commentary could be made regarding which subtype may have a higher Tat-TAR binding affinity. Future studies investigating Tat-TAR binding should therefore use full-length Tat proteins and compare subtype-specific variations. Studies of such a nature may help explain why we see differential pathogenesis and prevalence when comparing HIV-1 subtypes.
人类免疫缺陷病毒 1 仍然是一个全球性的健康问题,迄今为止,全球有近 3800 万人感染艾滋病毒。人类免疫缺陷病毒 1 发病机制的复杂性及其随后的流行程度受到多种因素的影响,包括人类免疫缺陷病毒 1 亚型。人类免疫缺陷病毒 1 亚型的变异延伸到人类免疫缺陷病毒 1 病毒蛋白的氨基酸序列变异。特别值得关注的是转录激活(Tat)蛋白,因为它在病毒转录中起着关键作用。Tat 蛋白主要通过与反式激活反应(TAR)RNA 元件结合来激活 HIV-1 转录延伸。Tat 蛋白的亚型特异性序列变异影响 Tat-TAR 结合亲和力。尽管有几项研究调查了 Tat-TAR 结合,但尚不清楚 Tat 蛋白的哪些区域和/或单个 Tat 氨基酸残基可能有助于 TAR 结合亲和力。因此,我们对研究 Tat-TAR 结合的研究进行了范围综述。我们旨在综合已发表的数据,以确定(1)可能参与 TAR 结合的 Tat 蛋白区域,(2)参与 TAR 结合的关键 Tat 氨基酸,以及(3)如果 Tat 亚型特异性变异影响 TAR 结合。共有 13 项研究符合我们的纳入标准,主要发现是:(1)碱性结构域(47-59)以外的 N 端和 C 端氨基酸可能在增加 Tat-TAR 结合亲和力方面很重要,(2)赖氨酸和精氨酸(47-59)的取代导致与 TAR 的结合亲和力降低,以及(3)没有一项纳入的研究调查了 Tat 亚型特异性取代,因此无法就哪种亚型可能具有更高的 Tat-TAR 结合亲和力发表评论。未来研究 Tat-TAR 结合时,应使用全长 Tat 蛋白并比较亚型特异性变异。此类研究可能有助于解释为什么我们在比较 HIV-1 亚型时会看到不同的发病机制和流行程度。
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