Laboratory of Deep-Sea Microbial Cell Biology, Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences, Sanya, PR China.
University of Chinese Academy of Sciences, Beijing, PR China.
Int J Syst Evol Microbiol. 2023 Mar;73(3). doi: 10.1099/ijsem.0.005725.
A novel moderately thermophilic heterotrophic bacterium, designated strain 143-21, was isolated from a deep-sea hydrothermal chimney sample collected from the Central Indian Ridge at a depth of 2 440 m. Phylogenetic analysis indicated that strain 143-21 belongs to the genus . It was most closely related to SY095 (96.79 % 16S rRNA gene sequence similarity) and Ra1766H (96.52 %). Genomic analysis showed that strain 143-21 shares 79.79-84.45 % average nucleotide identity and 23.50-29.20 % digital DNA-DNA hybridization with the species of the genus , respectively. Cells were rod-shaped, non-motile, Gram-positive-staining. Terminal endospores were observed in stationary-phase cells when strain 143-21 was grown on Thermococcales rich medium. Strain 143-21 was able to grow at 30-60 °C (optimum, 50 °C), pH 6.5-8.5 (optimum, pH 7.0) and in 1.0-7.0 % NaCl (w/v; optimum 2.0 %, w/v). Strain 143-21 utilized fructose, glucose, maltose, mannose, ribose, -acetyl-d-(+)-glucosamine and casamino acids, as well as amino acids including glutamate, lysine, histidine and cysteine. The main fermentation products from glucose were acetate (2.07 mM), H and CO. It did not reduce elemental sulphur, sulphate, thiosulphate, sulphite, fumarate, nitrate, nitrite and Fe (III). The predominant cellular fatty acids were C (48.8 %), C (12.9 %), and summed feature 3 (C ω7 and/or C ω6; 10.2 %). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol, as well as two unidentified phospholipids and four unidentified aminolipids. No respiratory quinones were detected. Based on its phylogenetic analysis and physiological characteristics, strain 143-21 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is strain 143-21 (=DSM 114408= MCCC 1K06400).
一株新型中度嗜热异养细菌,命名为 143-21 菌株,从印度洋中部海脊水深 2440 米的深海热液烟囱样本中分离得到。系统发育分析表明,菌株 143-21 属于 属。它与 SY095(96.79% 16S rRNA 基因序列相似性)和 Ra1766H(96.52%)最为密切相关。基因组分析表明,菌株 143-21 与该属的种的平均核苷酸同一性为 79.79-84.45%,数字 DNA-DNA 杂交率为 23.50-29.20%。细胞呈杆状,非运动性,革兰氏阳性染色。当 143-21 菌株在 Thermococcales 丰富培养基上生长时,观察到静止期细胞中有端生孢子。菌株 143-21 能够在 30-60°C(最佳,50°C)、pH6.5-8.5(最佳,pH7.0)和 1.0-7.0%NaCl(w/v;最佳 2.0%,w/v)下生长。菌株 143-21 可利用果糖、葡萄糖、麦芽糖、甘露糖、核糖、N-乙酰-d-(+)-葡糖胺和复合氨基酸,以及包括谷氨酸、赖氨酸、组氨酸和半胱氨酸在内的氨基酸。葡萄糖的主要发酵产物为乙酸(2.07 mM)、H 和 CO。它不能还原元素硫、硫酸盐、硫代硫酸盐、亚硫酸盐、延胡索酸、硝酸盐、亚硝酸盐和 Fe(III)。主要的细胞脂肪酸为 C(48.8%)、C(12.9%)和总和特征 3(C ω7 和/或 C ω6;10.2%)。主要的极性脂类为双磷脂酰甘油、磷脂酰乙醇胺和磷脂酰甘油,以及两种未鉴定的磷脂和四种未鉴定的胺脂。未检测到呼吸醌。基于其系统发育分析和生理特征,菌株 143-21 被认为代表 属的一个新型种,建议将其命名为 sp. nov。模式菌株为 143-21 菌株(=DSM 114408=MCCC 1K06400)。