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使用自动算法在癫痫啮齿动物模型中快速检测和量化发作间期棘波和癫痫发作

Fast Detection and Quantification of Interictal Spikes and Seizures in a Rodent Model of Epilepsy Using an Automated Algorithm.

作者信息

Kyle Jackson J, Sharma Shaunik, Tiarks Grant, Rodriguez Saul, Bassuk Alexander G

机构信息

Traumatic Brain Injury and Epilepsy Research Laboratory, Department of Pediatrics, 2040 Medical Laboratories, Carver College of Medicine, University of Iowa, Iowa City, Iowa 52242, United States.

出版信息

Bio Protoc. 2023 Mar 20;13(6):e4632. doi: 10.21769/BioProtoc.4632.

Abstract

The electroencephalogram (EEG) is a powerful tool for analyzing neural activity in various neurological disorders, both in animals and in humans. This technology has enabled researchers to record the brain's abrupt changes in electrical activity with high resolution, thus facilitating efforts to understand the brain's response to internal and external stimuli. The EEG signal acquired from implanted electrodes can be used to precisely study the spiking patterns that occur during abnormal neural discharges. These patterns can be analyzed in conjunction with behavioral observations and serve as an important means for accurate asses sment and quantification of behavioral and electrographic seizures. Numerous algorithms have been developed for the automated quantification of EEG data; however, many of these algorithms were developed with outdated programming languages and require robust computational hardware to run effectively. Additionally, some of these programs require substantial computation time, reducing the relative benefits of automation. Thus, we sought to develop an automated EEG algorithm that was programmed using a familiar programming language (MATLAB), and that could run efficiently without extensive computational demands. This algorithm was developed to quantify interictal spikes and seizures in mice that were subjected to traumatic brain injury. Although the algorithm was designed to be fully automated, it can be operated manually, and all the parameters for EEG activity detection can be easily modified for broad data analysis. Additionally, the algorithm is capable of processing months of lengthy EEG datasets in the order of minutes to hours, reducing both analysis time and errors introduced through manual-based processing.

摘要

脑电图(EEG)是分析动物和人类各种神经系统疾病中神经活动的有力工具。这项技术使研究人员能够高分辨率记录大脑电活动的突然变化,从而有助于了解大脑对内部和外部刺激的反应。从植入电极获取的EEG信号可用于精确研究异常神经放电期间出现的尖峰模式。这些模式可以结合行为观察进行分析,并作为准确评估和量化行为性和脑电图癫痫发作的重要手段。已经开发了许多用于EEG数据自动量化的算法;然而,其中许多算法是用过时的编程语言开发的,需要强大的计算硬件才能有效运行。此外,其中一些程序需要大量的计算时间,降低了自动化的相对优势。因此,我们试图开发一种使用熟悉的编程语言(MATLAB)编程的自动EEG算法,该算法可以在不需要大量计算需求的情况下高效运行。该算法旨在量化遭受创伤性脑损伤的小鼠的发作间期尖峰和癫痫发作。虽然该算法设计为完全自动化,但也可以手动操作,并且可以轻松修改EEG活动检测的所有参数以进行广泛的数据分析。此外,该算法能够在几分钟到几小时内处理长达数月的冗长EEG数据集,减少了分析时间以及基于人工处理引入的误差。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5799/10031526/b1278f53498a/BioProtoc-13-06-4632-v001.jpg

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