• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

Gene expression profiles of oil palm leaves from different oil yields and genetic population: Transcriptomic dataset.

作者信息

Apriyanto Ardha, Ernawan Reza, Putra Mokhamad Krishna Adianto, Susilo Ricki, Ajambang Walter, Pancoro Adi, Wibowo Cahyo Sri

机构信息

Research and Development, PT. Astra Agro Lestari Tbk. Jl. Puloayang Raya Blok OR I, Kawasan Industri Pulogadung, Jakarta Timur, Indonesia.

Biopolymer Analytics, Institute of Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, Building 20, Potsdam-Golm, Germany.

出版信息

Data Brief. 2023 Mar 8;48:109043. doi: 10.1016/j.dib.2023.109043. eCollection 2023 Jun.

DOI:10.1016/j.dib.2023.109043
PMID:36969972
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10034636/
Abstract

Oil palm (Elaeis guineensis Jacq.) is one of the most important oil-producing crops in the world. However, the demand for oil from this crop is expected to increase in the future. A comparative gene expression profile of the oil palm leaves was needed in order to understand the key factors that influence the oil production. Here, we reported an RNA-seq dataset from three different oil yields and three different genetic populations of oil palm. All raw sequencing reads were obtained from an Illumina NextSeq 500 platform. We also provide a list of the genes and their expression levels resulting from the RNA-sequencing. This transcriptomic dataset will provide a valuable resource for increasing oil yield.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c458/10034636/c90a12eac5c9/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c458/10034636/3197aecfcfba/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c458/10034636/9e48e14bc3ae/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c458/10034636/c90a12eac5c9/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c458/10034636/3197aecfcfba/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c458/10034636/9e48e14bc3ae/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c458/10034636/c90a12eac5c9/gr3.jpg

相似文献

1
Gene expression profiles of oil palm leaves from different oil yields and genetic population: Transcriptomic dataset.
Data Brief. 2023 Mar 8;48:109043. doi: 10.1016/j.dib.2023.109043. eCollection 2023 Jun.
2
Transcriptomic analysis of mesocarp tissue during fruit development of the oil palm revealed specific isozymes related to starch metabolism that control oil yield.油棕果实发育过程中中果皮组织的转录组分析揭示了与淀粉代谢相关的特定同工酶,这些同工酶控制着油产量。
Front Plant Sci. 2023 Jul 24;14:1220237. doi: 10.3389/fpls.2023.1220237. eCollection 2023.
3
Parthenocarpy-related genes induced by naphthalene acetic acid in oil palm interspecific O × G [ (Kunth) Cortés × Jacq.] hybrids.萘乙酸诱导油棕种间杂种O×G [(Kunth)Cortés×Jacq.]中与单性结实相关的基因。
Front Genet. 2023 Mar 20;14:1099489. doi: 10.3389/fgene.2023.1099489. eCollection 2023.
4
Proteomic profiling of mature leaves from oil palm (Elaeis guineensis Jacq.).油棕(Elaeis guineensis Jacq.)成熟叶片的蛋白质组分析。
Electrophoresis. 2017 Apr;38(8):1147-1153. doi: 10.1002/elps.201600506. Epub 2017 Mar 2.
5
Transcriptome analysis reveals key developmental and metabolic regulatory aspects of oil palm (Elaeis guineensis Jacq.) during zygotic embryo development.转录组分析揭示了油棕(Elaeis guineensis Jacq.)合子胚发育过程中关键的发育和代谢调控方面。
BMC Plant Biol. 2022 Mar 12;22(1):112. doi: 10.1186/s12870-022-03459-2.
6
Flavonoid Composition and Pharmacological Properties of Jacq. Leaf Extracts: A Systematic Review.雅克叶提取物的类黄酮成分与药理特性:一项系统综述
Pharmaceuticals (Basel). 2021 Sep 24;14(10):961. doi: 10.3390/ph14100961.
7
Phenomics, genomics of oil palm ( Jacq.): way forward for making sustainable and high yielding quality oil palm.油棕(Jacq.)的表型组学、基因组学:实现可持续高产优质油棕的前进方向。
Physiol Mol Biol Plants. 2021 Mar;27(3):587-604. doi: 10.1007/s12298-021-00964-w. Epub 2021 Mar 14.
8
Genetic control of fatty acid composition in coconut (Cocos nucifera), African oil palm (Elaeis guineensis), and date palm (Phoenix dactylifera).椰子(Cocos nucifera)、非洲油棕(Elaeis guineensis)和枣椰树(Phoenix dactylifera)中脂肪酸组成的遗传控制。
Planta. 2019 Feb;249(2):333-350. doi: 10.1007/s00425-018-3003-x. Epub 2018 Sep 7.
9
Genetic architecture of palm oil fatty acid composition in cultivated oil palm (Elaeis guineensis Jacq.) compared to its wild relative E. oleifera (H.B.K) Cortés.与野生近缘种油橄榄(Elaeis oleifera (H.B.K) Cortés)相比,栽培油棕(Elaeis guineensis Jacq.)棕榈油脂肪酸组成的遗传结构。
PLoS One. 2014 May 9;9(5):e95412. doi: 10.1371/journal.pone.0095412. eCollection 2014.
10
Developing genome-wide SNPs and constructing an ultrahigh-density linkage map in oil palm.在油棕中开发全基因组 SNPs 并构建超高密度连锁图谱。
Sci Rep. 2018 Jan 12;8(1):691. doi: 10.1038/s41598-017-18613-2.

引用本文的文献

1
Unveiling the Secrets of Oil Palm Genetics: A Look into Omics Research.揭开油棕遗传学的秘密:组学研究一览。
Int J Mol Sci. 2024 Aug 7;25(16):8625. doi: 10.3390/ijms25168625.

本文引用的文献

1
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype.基于图的基因组比对和基因分型与 HISAT2 和 HISAT-genotype。
Nat Biotechnol. 2019 Aug;37(8):907-915. doi: 10.1038/s41587-019-0201-4. Epub 2019 Aug 2.
2
NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis.NetworkAnalyst 3.0:一个用于全面基因表达谱分析和荟萃分析的可视化分析平台。
Nucleic Acids Res. 2019 Jul 2;47(W1):W234-W241. doi: 10.1093/nar/gkz240.
3
fastp: an ultra-fast all-in-one FASTQ preprocessor.
fastp:一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
4
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.使用DESeq2对RNA测序数据的倍数变化和离散度进行适度估计。
Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8.
5
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic:一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
6
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.featureCounts:一个用于将序列读取分配给基因组特征的高效通用程序。
Bioinformatics. 2014 Apr 1;30(7):923-30. doi: 10.1093/bioinformatics/btt656. Epub 2013 Nov 13.