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通过对新病毒的分离和基因组特征分析,在极地地区发现丰富的病毒属。

Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus against .

机构信息

College of Marine Life Sciences, Institute of Evolution and Marine Biodiversity, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Center for Ocean Carbon Neutrality, Ocean University of China, Qingdao, China.

School of Oceanography, Shanghai Jiao Tong University, Shanghai, China.

出版信息

Appl Environ Microbiol. 2023 Apr 26;89(4):e0189622. doi: 10.1128/aem.01896-22. Epub 2023 Mar 28.

Abstract

The marine bacterial family , is well-known for its ability to degrade hydrocarbons and for its close association with algal blooms. However, only a few -infecting phages have been reported thus far. Here, we report on a novel phage, namely, vB_OsaM_PD0307, which has a 44,421 bp linear dsDNA genome and is the first myovirus infecting . A genomic analysis demonstrated that vB_OsaM_PD0307 is a variant of current phage isolates from the NCBI data set but that it has similar genomic features to two high-quality, uncultured viral genomes identified from marine metagenomes. Hence, we propose that vB_OsaM_PD0307 can be classified as the type phage of a new genus, designated . Additionally, metagenomic read mapping results have further shown that species are widespread in the global ocean, display distinct biogeographic distributions, and are abundant in polar regions. In summary, our findings expand the current understanding of the genomic characteristics, phylogenetic diversity, and distribution of phages. phage vB_OsaM_PD0307 is the first myovirus found to infect , and it represents a novel abundant viral genus in polar regions. This study provides insights into the genomic, phylogenetic, and ecological characteristics of the new viral genus, namely .

摘要

海洋细菌科以降解碳氢化合物的能力和与藻华的密切关联而闻名。然而,迄今为止,仅报道了少数几种感染该科的噬菌体。在这里,我们报告了一种新型噬菌体,即 vB_OsaM_PD0307,它具有 44,421bp 的线性 dsDNA 基因组,是第一个感染的肌尾噬菌体。基因组分析表明,vB_OsaM_PD0307 是 NCBI 数据集中目前噬菌体分离株的变体,但它与从海洋宏基因组中鉴定出的两个高质量未培养病毒基因组具有相似的基因组特征。因此,我们建议将 vB_OsaM_PD0307 归类为新属的代表噬菌体,命名为 。此外,宏基因组读映射结果进一步表明,在全球海洋中广泛存在 种,具有独特的生物地理分布,并且在极地地区丰富。总之,我们的研究结果扩展了对 噬菌体的基因组特征、系统发育多样性和分布的现有认识。噬菌体 vB_OsaM_PD0307 是第一个发现感染的肌尾噬菌体,它代表了极地地区一种新的丰富的病毒属。本研究提供了对新病毒属即 的基因组、系统发育和生态特征的深入了解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6545/10132091/40b2d0474bbb/aem.01896-22-f001.jpg

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