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花鲈分子克隆、单核苷酸多态性筛选及生长相关性状分析

Molecular Cloning, Screening of Single Nucleotide Polymorphisms, and Analysis of Growth-Associated Traits of in Spotted Sea Bass ().

作者信息

Fan Sigang, Wang Pengfei, Zhao Chao, Yan Lulu, Zhang Bo, Qiu Lihua

机构信息

Guangdong Provincial Key Laboratory of Fishery Ecology and Environment, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou 510300, China.

出版信息

Animals (Basel). 2023 Mar 8;13(6):982. doi: 10.3390/ani13060982.

Abstract

The insulin-like growth factor 2 gene () is thought to be a key factor that could regulate animal growth. In fish, few researchers have reported on the single nucleotide polymorphisms (SNPs) located in and their association with growth traits. We screened the SNPs of from the spotted sea bass () by Sanger sequencing and made an association between these SNPs with growth traits. The full-length complementary (c) DNA of was 1045 bp, including an open reading frame of 648 bp. The amino acid sequence of Igf2 contained a signal peptide, an IGF domain, and an IGF2_C domain. Multiple sequence alignment showed that the IGF domain and IGF2_C domain were conserved in vertebrates. The genome sequence of had a length of 6227 bp. Fourteen SNPs (13 in the introns and one in one of the exons) were found in the genome sequence of . Four SNPs located in the intron were significantly associated with growth traits ( < 0.05). These results demonstrated that these SNPs could be candidate molecular markers for breeding programs in .

摘要

胰岛素样生长因子2基因()被认为是调节动物生长的关键因素。在鱼类中,很少有研究人员报道位于该基因中的单核苷酸多态性(SNP)及其与生长性状的关联。我们通过桑格测序筛选了花鲈()中该基因的SNP,并将这些SNP与生长性状进行关联分析。该基因的全长互补(c)DNA为1045 bp,包括一个648 bp的开放阅读框。Igf2的氨基酸序列包含一个信号肽、一个IGF结构域和一个IGF2_C结构域。多序列比对显示,IGF结构域和IGF2_C结构域在脊椎动物中是保守的。该基因的基因组序列长度为6227 bp。在该基因的基因组序列中发现了14个SNP(13个在内含子中,1个在外显子中)。位于内含子中的4个SNP与生长性状显著相关(<0.05)。这些结果表明,这些SNP可能是花鲈育种计划的候选分子标记。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/47dd/10044540/a7702f5d6619/animals-13-00982-g001.jpg

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