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黄杨绢野螟的完整线粒体基因组及对螟蛾总科系统发育的见解

The Complete Mitochondrial Genome of Box Tree Moth and Insights into Phylogenetics in Pyraloidea.

作者信息

Gao Yichang, Zhang Jie, Wang Qinghao, Liu Qiuning, Tang Boping

机构信息

School of Pharmacy, Nanjing University of Chinese Medicine, Nanjing 210023, China.

Jiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Synthetic Innovation Centre for Coastal Bio-Agriculture, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, School of Wetlands, Yancheng Teachers University, Yancheng 224007, China.

出版信息

Animals (Basel). 2023 Mar 14;13(6):1045. doi: 10.3390/ani13061045.

Abstract

To resolve and reconstruct phylogenetic relationships within Pyraloidea based on molecular data, the mitochondrial genome (mitogenome) was widely applied to understand phylogenetic relations at different taxonomic levels. In this research, a complete mitogenome of was recorded, and the phylogenetic position of was inferred based on the sequence in combination with other available sequence data. According to the research, the circular mitochondrial genome is 15,180 bp in length. It contains 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), 13 typical protein-coding genes (PCGs), and a non-coding control region. The arrangement of a gene of the mitogenome is not the same as the putative ancestral arthropod mitogenome. All of the PCGs are initiated by ATN codons, except for the cytochrome c oxidase subunit 1 () gene, which is undertaken by CGA. Five genes have incomplete stop codons that contain only 'T'. All tRNA genes display a typical clover-leaf structure of mitochondrial tRNA, except for (AGN). The control region contained an 'ATAGG(A)'-like motif followed by a poly-T stretch. Based on the mitochondrial data, phylogenetic analysis within Pyraloidea was carried out using Bayesian inference (BI) and maximum likelihood (ML) analyses. Phylogenetic analysis showed that is more closely related to within Spilomelinae than those of Crambidae and Pyraloidea.

摘要

为了基于分子数据解析和重建螟蛾总科内的系统发育关系,线粒体基因组(mitogenome)被广泛应用于理解不同分类水平上的系统发育关系。在本研究中,记录了一个完整的线粒体基因组,并结合其他可用序列数据,根据该序列推断了其系统发育位置。根据研究,环状线粒体基因组长度为15,180 bp。它包含22个转移RNA基因(tRNAs)、两个核糖体RNA基因(rRNAs)、13个典型的蛋白质编码基因(PCGs)和一个非编码控制区。该线粒体基因组的基因排列与假定的节肢动物祖先线粒体基因组不同。除细胞色素c氧化酶亚基1()基因由CGA起始外,所有PCGs均由ATN密码子起始。五个基因具有仅含'T'的不完全终止密码子。除(AGN)外,所有tRNA基因均呈现出线粒体tRNA典型的三叶草结构。控制区包含一个'ATAGG(A)'样基序,其后是一个多聚-T序列。基于线粒体数据,使用贝叶斯推断(BI)和最大似然(ML)分析对螟蛾总科内进行了系统发育分析。系统发育分析表明,在绢螟亚科内,与的关系比与草螟科和螟蛾总科其他类群的关系更密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e35b/10044125/5233ecaa3488/animals-13-01045-g001.jpg

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