Tang Yao, Wu Weihuang, Zheng Xueyan, Lu Lu, Chen Xinying, Hao Zhaodong, Liu Siqin, Chen Ying
Key Laboratory of Forest Genetics and Biotechnology of Ministry of Education, Co-Innovation Center for the Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China.
National Germplasm Bank of Chinese fir at Fujian Yangkou Forest Farm, Shunchang 353211, China.
Plants (Basel). 2023 Mar 17;12(6):1353. doi: 10.3390/plants12061353.
AT-hook motif nuclear localized (AHL) is a transcription factor that can directly induce plant somatic embryogenesis without adding exogenous hormones. One of its functional domains, the AT-hook motif, has a chromatin-modifying function and participates in various cellular processes, including DNA replication and repair and gene transcription leading to cell growth. (Hemsl.) Sargent is an important ornamental and timber tree in China. However, its low drought-resistant ability further leads to a low natural growth rate of its population. Based on bioinformatics analysis, this study identified a total of 21 in . To explore the expression pattern of the gene family under drought and somatic embryogenesis, we performed a systematic analysis including basic characteristics, gene structure, chromosome localization, replication event, cis-acting elements and phylogenetic analyses. According to the phylogenetic tree, the 21 genes are divided into three separate clades (Clade I, II, and III). Cis-acting element analysis indicated the involvement of the genes in drought, cold, light, and auxin regulation. In the generated drought stress transcriptome, a total of eight genes showed increased expression levels, with their expression peaking at 3 h and leveling off after 1 d. Nearly all genes were highly expressed in the process of somatic embryogenesis. In this study, we performed a genome-wide analysis of the gene family and found that take part in resistance to drought stress and the development of somatic embryos. These findings will provide an important theoretical basis for understanding of the gene function.
AT钩基序核定位蛋白(AHL)是一种转录因子,无需添加外源激素即可直接诱导植物体细胞胚胎发生。其功能域之一,即AT钩基序,具有染色质修饰功能,并参与各种细胞过程,包括DNA复制、修复以及导致细胞生长的基因转录。(伯乐树)钟萼木是中国一种重要的观赏和用材树种。然而,其抗旱能力低进一步导致其种群自然生长率低。基于生物信息学分析,本研究在(某种植物)中总共鉴定出21个(AHL基因)。为了探究AHL基因家族在干旱和体细胞胚胎发生条件下的表达模式,我们进行了系统分析,包括基本特征、基因结构、染色体定位、复制事件、顺式作用元件和系统发育分析。根据系统发育树,21个AHL基因被分为三个独立的进化枝(进化枝I、II和III)。顺式作用元件分析表明AHL基因参与干旱、寒冷、光照和生长素调节。在生成的干旱胁迫转录组中,总共8个AHL基因表达水平升高,其表达在3小时达到峰值,并在1天后趋于平稳。几乎所有AHL基因在体细胞胚胎发生过程中均高度表达。在本研究中,我们对AHL基因家族进行了全基因组分析,发现(AHL基因)参与干旱胁迫抗性和体细胞胚胎发育。这些发现将为理解AHL基因功能提供重要的理论基础。