Department of Machine Learning, Moffitt Cancer Center, Tampa, FL, 33612, USA.
University of Michigan Transport Research Institute, University of Michigan, Ann Arbor, MI, 48109, USA.
Sci Rep. 2023 Mar 31;13(1):5279. doi: 10.1038/s41598-023-32032-6.
Involvement of many variables, uncertainty in treatment response, and inter-patient heterogeneity challenge objective decision-making in dynamic treatment regime (DTR) in oncology. Advanced machine learning analytics in conjunction with information-rich dense multi-omics data have the ability to overcome such challenges. We have developed a comprehensive artificial intelligence (AI)-based optimal decision-making framework for assisting oncologists in DTR. In this work, we demonstrate the proposed framework to Knowledge Based Response-Adaptive Radiotherapy (KBR-ART) applications by developing an interactive software tool entitled Adaptive Radiotherapy Clinical Decision Support (ARCliDS). ARCliDS is composed of two main components: Artifcial RT Environment (ARTE) and Optimal Decision Maker (ODM). ARTE is designed as a Markov decision process and modeled via supervised learning. Given a patient's pre- and during-treatment information, ARTE can estimate treatment outcomes for a selected daily dosage value (radiation fraction size). ODM is formulated using reinforcement learning and is trained on ARTE. ODM can recommend optimal daily dosage adjustments to maximize the tumor local control probability and minimize the side effects. Graph Neural Networks (GNN) are applied to exploit the inter-feature relationships for improved modeling performance and a novel double GNN architecture is designed to avoid nonphysical treatment response. Datasets of size 117 and 292 were available from two clinical trials on adaptive RT in non-small cell lung cancer (NSCLC) patients and adaptive stereotactic body RT (SBRT) in hepatocellular carcinoma (HCC) patients, respectively. For training and validation, dense data with 297 features were available for 67 NSCLC patients and 110 features for 71 HCC patients. To increase the sample size for ODM training, we applied Generative Adversarial Networks to generate 10,000 synthetic patients. The ODM was trained on the synthetic patients and validated on the original dataset. We found that, Double GNN architecture was able to correct the nonphysical dose-response trend and improve ARCliDS recommendation. The average root mean squared difference (RMSD) between ARCliDS recommendation and reported clinical decisions using double GNNs were 0.61 [0.03] Gy/frac (mean [sem]) for adaptive RT in NSCLC patients and 2.96 [0.42] Gy/frac for adaptive SBRT HCC compared to the single GNN's RMSDs of 0.97 [0.12] Gy/frac and 4.75 [0.16] Gy/frac, respectively. Overall, For NSCLC and HCC, ARCliDS with double GNNs was able to reproduce 36% and 50% of the good clinical decisions (local control and no side effects) and improve 74% and 30% of the bad clinical decisions, respectively. In conclusion, ARCliDS is the first web-based software dedicated to assist KBR-ART with multi-omics data. ARCliDS can learn from the reported clinical decisions and facilitate AI-assisted clinical decision-making for improving the outcomes in DTR.
涉及许多变量、治疗反应的不确定性以及患者间的异质性,这些都对肿瘤学中的动态治疗方案(DTR)的客观决策提出了挑战。高级机器学习分析与信息丰富的密集多组学数据相结合,具有克服此类挑战的能力。我们已经开发了一种全面的人工智能(AI)为基础的决策框架,以协助肿瘤学家进行 DTR。在这项工作中,我们通过开发一个名为自适应放射治疗临床决策支持(ARCliDS)的交互式软件工具,展示了该框架在基于知识的反应适应性放射治疗(KBR-ART)应用中的应用。ARCliDS 由两个主要组件组成:人工 RT 环境(ARTE)和最优决策制定器(ODM)。ARTE 被设计为马尔可夫决策过程,并通过监督学习进行建模。给定患者的治疗前和治疗期间的信息,ARTE 可以估计所选每日剂量值(辐射分数大小)的治疗结果。ODM 通过强化学习进行公式化,并在 ARTE 上进行训练。ODM 可以推荐最佳的每日剂量调整,以最大化肿瘤局部控制概率并最小化副作用。图神经网络(GNN)被应用于利用特征之间的关系,以提高建模性能,并设计了一种新的双 GNN 架构,以避免非物理的治疗反应。两个临床试验中的自适应放射治疗 NSCLC 患者和自适应立体定向体放射治疗(SBRT)HCC 患者的数据集分别为 117 和 292 个大小。对于训练和验证,67 名 NSCLC 患者有 297 个密集特征,71 名 HCC 患者有 110 个特征。为了增加 ODM 训练的样本量,我们应用了生成对抗网络来生成 10000 个合成患者。ODM 在合成患者上进行训练,并在原始数据集上进行验证。我们发现,双 GNN 架构能够纠正非物理剂量反应趋势,并改进 ARCliDS 建议。使用双 GNN 的 ARCliDS 建议与使用双 GNN 的报告临床决策之间的平均均方根差(RMSD)分别为 0.61 [0.03] Gy/frac(平均值[sem])用于 NSCLC 患者的自适应 RT 和 2.96 [0.42] Gy/frac 用于自适应 SBRT HCC,而单 GNN 的 RMSD 分别为 0.97 [0.12] Gy/frac 和 4.75 [0.16] Gy/frac。总体而言,对于 NSCLC 和 HCC,具有双 GNN 的 ARCliDS 能够复制 36%和 50%的良好临床决策(局部控制和无副作用),并改善 74%和 30%的不良临床决策。总之,ARCliDS 是第一个专门用于协助 KBR-ART 进行多组学数据的基于网络的软件。ARCliDS 可以从报告的临床决策中学习,并促进人工智能辅助临床决策制定,以改善 DTR 的结果。