Zheng Zhiyong, Kim Soo Hyeon, Chovin Arnaud, Clement Nicolas, Demaille Christophe
Université Paris Cité, CNRS, Laboratoire d'Electrochimie Moléculaire F-75013 Paris France
IIS, LIMMS/CNRS-IIS UMI2820, The Univ. of Tokyo 4-6-1 Komaba Meguro-ku Tokyo 153-8505 Japan
Chem Sci. 2023 Mar 8;14(13):3652-3660. doi: 10.1039/d3sc00320e. eCollection 2023 Mar 29.
The mechanism responsible for electron transport within layers of redox DNA anchored to electrodes has been extensively studied over the last twenty years, but remains controversial. Herein, we thoroughly study the electrochemical behavior of a series of short, model, ferrocene (Fc) end-labeled dT oligonucleotides, terminally attached to gold electrodes, using high scan rate cyclic voltammetry complemented by molecular dynamics simulations. We evidence that the electrochemical response of both single-stranded and duplexed oligonucleotides is controlled by the electron transfer kinetics at the electrode, obeying Marcus theory, but with reorganization energies considerably lowered by the attachment of the ferrocene to the electrode the DNA chain. This so far unreported effect, that we attribute to a slower relaxation of water around Fc, uniquely shapes the electrochemical response of Fc-DNA strands and, being markedly dissimilar for single-stranded and duplexed DNA, contributes to the signaling mechanism of E-DNA sensors.
在过去二十年里,人们对固定在电极上的氧化还原DNA层内电子传输的机制进行了广泛研究,但仍存在争议。在此,我们使用高扫描速率循环伏安法并辅以分子动力学模拟,深入研究了一系列末端连接到金电极上的、短的、模型化的、二茂铁(Fc)末端标记的dT寡核苷酸的电化学行为。我们证明,单链和双链寡核苷酸的电化学响应均由电极处的电子转移动力学控制,符合马库斯理论,但由于二茂铁连接到电极 - DNA链上,重组能显著降低。这种迄今为止未报道的效应,我们将其归因于二茂铁周围水的弛豫较慢,它独特地塑造了Fc - DNA链的电化学响应,并且由于单链和双链DNA明显不同,有助于E - DNA传感器的信号传导机制。