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利用蛋白质笼状结构调控生物催化特性

Tuning properties of biocatalysis using protein cage architectures.

作者信息

Wang Yang, Douglas Trevor

机构信息

Department of Chemistry, Indiana University, 800 E Kirkwood Ave, Bloomington, IN 47405, USA.

出版信息

J Mater Chem B. 2023 Apr 26;11(16):3567-3578. doi: 10.1039/d3tb00168g.

Abstract

Compartmentalization of cellular activities is an extremely important mechanism within cells, across all domains of life, for high efficiency of cell function. Bacterial microcompartments are exemplary protein-based cage structures that act as subcellular compartments encapsulating biocatalysts. They are able to achieve segregation of metabolic reactions from the bulk environment, which can alter the properties (including efficiency and selectivity) of biochemical processes and enhance overall cell function. By mimicking these naturally occurring compartments using protein cage platforms, synthetic catalytic materials have been made to achieve well-defined biochemical catalysis with desired and enhanced activities. This Perspective reviews the study in the past decade or so on artificial nanoreactors developed based on protein cage architectures, and summarizes the effects of protein cages on the properties of encapsulated enzymatic catalysis, including reaction efficiency and substrate selectivity. Given the significance of metabolic pathways in living systems and its inspiration in biocatalysis, our perspectives are also presented on cascade reactions, which are illustrated from three aspects: the technical challenges of controlling molecular diffusion to achieve the desired properties of multistep biocatalysis, the solutions to these challenges presented by nature, and how biomimetic approaches have been adopted in the design of biocatalytic materials using protein cage architectures.

摘要

细胞活动的区室化是细胞内一种极其重要的机制,在生命的所有领域中,对于细胞功能的高效运行至关重要。细菌微区室是基于蛋白质的典型笼状结构,充当包裹生物催化剂的亚细胞区室。它们能够实现代谢反应与整体环境的隔离,这可以改变生化过程的性质(包括效率和选择性)并增强细胞的整体功能。通过使用蛋白质笼平台模拟这些天然存在的区室,已制备出合成催化材料,以实现具有所需和增强活性的明确生化催化。这篇综述回顾了过去十年左右基于蛋白质笼架构开发的人工纳米反应器的研究,并总结了蛋白质笼对包封酶催化性质的影响,包括反应效率和底物选择性。鉴于代谢途径在生命系统中的重要性及其对生物催化的启发,我们还从级联反应的三个方面阐述了观点:控制分子扩散以实现多步生物催化所需性质的技术挑战、自然界针对这些挑战的解决方案,以及在使用蛋白质笼架构设计生物催化材料时如何采用仿生方法。

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