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一种用于自动从肾脏组织病理学图像中对肾细胞癌进行分级的新型数据集和高效深度学习框架。

A novel dataset and efficient deep learning framework for automated grading of renal cell carcinoma from kidney histopathology images.

机构信息

Department of Electronics and Communication Engineering, National Institute of Technology Karnataka, Surathkal, Mangaluru, Karnataka, 575025, India.

School of Electronics Engineering, Vellore Institute of Technology, Chennai, Tamil Nadu, India.

出版信息

Sci Rep. 2023 Apr 7;13(1):5728. doi: 10.1038/s41598-023-31275-7.

Abstract

Trends of kidney cancer cases worldwide are expected to increase persistently and this inspires the modification of the traditional diagnosis system to respond to future challenges. Renal Cell Carcinoma (RCC) is the most common kidney cancer and responsible for 80-85% of all renal tumors. This study proposed a robust and computationally efficient fully automated Renal Cell Carcinoma Grading Network (RCCGNet) from kidney histopathology images. The proposed RCCGNet contains a shared channel residual (SCR) block which allows the network to learn feature maps associated with different versions of the input with two parallel paths. The SCR block shares the information between two different layers and operates the shared data separately by providing beneficial supplements to each other. As a part of this study, we also introduced a new dataset for the grading of RCC with five different grades. We obtained 722 Hematoxylin & Eosin (H &E) stained slides of different patients and associated grades from the Department of Pathology, Kasturba Medical College (KMC), Mangalore, India. We performed comparable experiments which include deep learning models trained from scratch as well as transfer learning techniques using pre-trained weights of the ImageNet. To show the proposed model is generalized and independent of the dataset, we experimented with one additional well-established data called BreakHis dataset for eight class-classification. The experimental result shows that proposed RCCGNet is superior in comparison with the eight most recent classification methods on the proposed dataset as well as BreakHis dataset in terms of prediction accuracy and computational complexity.

摘要

预计全球范围内肾癌病例的趋势将持续增加,这促使人们对传统的诊断系统进行修改,以应对未来的挑战。肾细胞癌(RCC)是最常见的肾癌,占所有肾肿瘤的 80-85%。本研究提出了一种稳健且计算高效的全自动肾细胞癌分级网络(RCCGNet),用于从肾脏组织病理学图像中进行分级。所提出的 RCCGNet 包含一个共享通道残差(SCR)块,允许网络从两个并行路径学习与输入的不同版本相关的特征图。SCR 块在两个不同的层之间共享信息,并通过相互提供有益的补充来分别对共享数据进行操作。作为本研究的一部分,我们还引入了一个新的数据集,用于对 RCC 的五个不同等级进行分级。我们从印度芒格洛尔的卡斯特巴医疗学院(KMC)的病理学系获得了 722 张不同患者的苏木精和曙红(H&E)染色载玻片以及相关的等级。我们进行了可比较的实验,包括从头开始训练的深度学习模型以及使用 ImageNet 的预训练权重进行的迁移学习技术。为了表明所提出的模型是通用的,并且与数据集无关,我们在另一个名为 BreakHis 的成熟数据集上进行了实验,用于进行八类分类。实验结果表明,在所提出的数据集以及 BreakHis 数据集上,与最近的八种分类方法相比,所提出的 RCCGNet 在预测准确性和计算复杂度方面具有优势。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f307/10082027/3d55eb6d2850/41598_2023_31275_Fig1_HTML.jpg

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