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巴西亚马逊地区一株假单胞菌中新发现的获得性 B1 MBL 亚群 BIM-1 的遗传和生化特性分析。

Genetic and biochemical characterization of BIM-1, a novel acquired subgroup B1 MBL found in a Pseudomonas sp. strain from the Brazilian Amazon region.

机构信息

Seção de Bacteriologia e Micologia, Instituto Evandro Chagas (IEC), Ananindeua, PA, Brazil.

Universidade Federal de São Paulo (UNIFESP), Laboratório ALERTA, Disciplina de Infectologia, Departamento de Medicina, Escola Paulista de Medicina (EPM), São Paulo, SP, Brazil.

出版信息

J Antimicrob Chemother. 2023 Jun 1;78(6):1359-1366. doi: 10.1093/jac/dkad077.


DOI:10.1093/jac/dkad077
PMID:37038995
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10232235/
Abstract

OBJECTIVES: To characterize a novel acquired MBL, BIM-1, in a Pseudomonas #2 (subgroup P. guariconensis) strain isolated from the Aurá river located in the Brazilian Amazon hydrographic basin. METHODS: WGS using an Illumina® MiSeq System was used to characterize the genome of Pseudomonas sp. IEC33019 strain. Southern blotting/hybridization assays were performed to confirm the location of the MBL-encoding gene, blaBIM-1 (Belém Imipenemase). Antimicrobial susceptibility testing, cloning, and biochemical and phenotypic characterization were performed to determine BIM-1 kinetics. RESULTS: The IEC33019 strain showed high resistance rates to β-lactams, ciprofloxacin and aminoglycosides, being susceptible only to polymyxins and susceptible, increased exposure to aztreonam. WGS analysis revealed a novel acquired MBL-encoding gene, blaBIM-1, found as a gene cassette inserted into a class 1 integron (In1326) that also carried qnrVC1 and aadA11e. In1326 was located in a complex transposon, Tn7122, carried by a 52.7 kb conjugative plasmid (pIEC33019) with a toxin/antitoxin system (vapB/vapC). BIM-1 belongs to the molecular subgroup B1 and shares 70.2% and 64.9% similarity with SIM-1 and IMP-1, respectively. Kinetics analysis of BIM-1 showed hydrolytic activity against all β-lactams tested. CONCLUSIONS: BIM-1 is a novel acquired MBL encoded by a gene carried by mobile genetic elements, which can be transferred to other Gram-negative bacilli (GNB). Because the IEC33019 strain was recovered from a river impacted by a populous metropolitan region with poor basic sanitation and served by limited potable freshwater, it would be important to establish the role of the BIM-1-producing GNB as nosocomial pathogens and/or as colonizers of the riverside population in this geographical region.

摘要

目的:对一株从巴西亚马逊流域的奥拉河分离出的假单胞菌#2 (假单胞菌属瓜拉尼亚种)菌株中发现的新型获得性 MBL,BIM-1 进行表型特征鉴定。

方法:采用 Illumina® MiSeq 系统进行全基因组测序,以鉴定假单胞菌 sp. IEC33019 菌株的基因组。通过 Southern blot/杂交实验来确认 MBL 编码基因 blaBIM-1(贝伦亚胺培南酶)的位置。进行药敏试验、克隆、生化和表型特征鉴定,以确定 BIM-1 的动力学。

结果:IEC33019 株对β-内酰胺类、环丙沙星和氨基糖苷类药物的耐药率较高,仅对多黏菌素类药物敏感,且对氨曲南的敏感性增加。全基因组序列分析揭示了一种新型获得性 MBL 编码基因 blaBIM-1,该基因作为一个基因盒插入到一个 I 类整合子(In1326)中,该整合子还携带 qnrVC1 和 aadA11e。In1326 位于一个复杂的转座子 Tn7122 上,Tn7122 由一个 52.7 kb 的可接合质粒(pIEC33019)携带,该质粒上还带有一个毒素/抗毒素系统(vapB/vapC)。BIM-1 属于分子亚群 B1,与 SIM-1 和 IMP-1 的相似度分别为 70.2%和 64.9%。BIM-1 的动力学分析表明,它对所有测试的β-内酰胺类药物均具有水解活性。

结论:BIM-1 是一种新型的获得性 MBL,由携带移动遗传元件的基因编码,该基因可转移至其他革兰氏阴性杆菌(GNB)。由于 IEC33019 菌株是从一条受到人口众多的大都市地区影响的河流中分离出来的,该地区的基本卫生条件较差,淡水供应有限,因此,有必要确定产生 BIM-1 的 GNB 是否作为医院获得性病原体以及/或作为该地区河流沿岸人群的定居者发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cda/10232235/3d9246890b1a/dkad077f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cda/10232235/82b382eb5fd7/dkad077f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cda/10232235/1e1d3b9ba993/dkad077f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cda/10232235/3d9246890b1a/dkad077f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cda/10232235/82b382eb5fd7/dkad077f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cda/10232235/1e1d3b9ba993/dkad077f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1cda/10232235/3d9246890b1a/dkad077f3.jpg

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引用本文的文献

[1]
Molecular Epidemiology of in Brazil: A Systematic Review and Meta-Analysis.

Antibiotics (Basel). 2024-10-17

[2]
Pseudomonas guariconensis Necrotizing Fasciitis, United Kingdom.

Emerg Infect Dis. 2024-1

[3]
Strategies to Name Metallo-β-Lactamases and Number Their Amino Acid Residues.

Antibiotics (Basel). 2023-12-16

[4]
Genomic Characterization of IMP-Producing in Bulgaria Reveals the Emergence of IMP-100, a Novel Plasmid-Mediated Variant Coexisting with a Chromosomal VIM-4.

Microorganisms. 2023-9-9

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