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非洲猪瘟病毒感染诱导猪免疫与代谢调控相关潜在miRNA-mRNA调控网络的鉴定

Identification of Potential miRNA-mRNA Regulatory Network Associated with Regulating Immunity and Metabolism in Pigs Induced by ASFV Infection.

作者信息

Pang Zhongbao, Chen Shiyu, Cui Shuai, Zhai Wenzhu, Huang Ying, Gao Xintao, Wang Yang, Jiang Fei, Guo Xiaoyu, Hao Yuxin, Li Wencai, Wang Lei, Zhu Hongfei, Wu Jiajun, Jia Hong

机构信息

Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.

College of Animal Medicine, Shandong Vocational Animal Science and Veterinary College, Weifang 261061, China.

出版信息

Animals (Basel). 2023 Apr 4;13(7):1246. doi: 10.3390/ani13071246.

Abstract

African swine fever (ASF) is a devastating infectious disease in domestic pigs caused by African swine fever virus (ASFV) with a mortality rate of about 100%. However, the understanding of the interaction between ASFV and host is still not clear. In this study, the expression differences and functional analysis of microRNA (miRNA) in porcine peripheral blood lymphocytes of ASFV infected pigs and healthy pigs were compared based on Illumina high-throughput sequencing, then the GO and KEGG signal pathways were analyzed. The miRNA related to immunity and inflammation were screened, and the regulatory network of miRNA-mRNA was drawn. A total of 70 differentially expressed miRNAs were found ( ≤ 0.05). Of these, 45 were upregulated and 25 were downregulated in ASFV-infected pigs vs. healthy pigs. A total of 8179 mRNA genes targeted by these 70 differentially expressed miRNA were predicted, of which 1447 mRNA genes were targeted by ssc-miR-2320-5p. Five differentially expressed miRNA were validated by RT-qPCR, which were consistent with the RNA-Seq results. The GO analysis revealed that a total of 30 gene functions were significantly enriched, including 7 molecular functions (MF), 13 cellular components (CC), and 10 biological processes (BP). The KEGG enrichment analysis revealed that the differentially expressed genes were significantly enriched in pathways related to immunity, inflammation, and various metabolic processes, in which a total of two downregulated miRNAs after infection and eight upregulated miRNAs related to immunity and inflammation were screened in ASFV-infected pigs vs. healthy pigs. The network of miRNA-mRNA showed that the mRNA target genes were strongly regulated by ssc-miR-214, ssc-miR-199b-3p, and ssc-miR-199a-3p. The mRNA target genes were enriched into the MAPK signaling pathway, Toll-like receptor signaling pathway, TNF signaling pathway, and IL-17 signaling pathway by using a KEGG enrichment analysis. Therefore, ASFV could regulate immunity and metabolism-related pathways in infected pigs by inducing differential expression of miRNAs. These results provided a new basis for further elucidating the interactions between ASFV and the host as well as the immunity regulation mechanisms of ASFV, which will be conducive to better controlling ASF.

摘要

非洲猪瘟(ASF)是由非洲猪瘟病毒(ASFV)引起的家猪毁灭性传染病,死亡率约为100%。然而,对ASFV与宿主之间相互作用的了解仍不清楚。在本研究中,基于Illumina高通量测序比较了ASFV感染猪和健康猪的猪外周血淋巴细胞中微小RNA(miRNA)的表达差异和功能分析,然后对GO和KEGG信号通路进行了分析。筛选出与免疫和炎症相关的miRNA,并绘制了miRNA-mRNA调控网络。共发现70个差异表达的miRNA(≤0.05)。其中,与健康猪相比,ASFV感染猪中有45个上调,25个下调。预测这70个差异表达的miRNA共靶向8179个mRNA基因,其中1447个mRNA基因被ssc-miR-2320-5p靶向。通过RT-qPCR验证了5个差异表达的miRNA,与RNA-Seq结果一致。GO分析显示,共有30个基因功能显著富集,包括7个分子功能(MF)、13个细胞成分(CC)和10个生物学过程(BP)。KEGG富集分析显示,差异表达基因在与免疫、炎症和各种代谢过程相关的通路中显著富集,其中与健康猪相比,ASFV感染猪中筛选出共2个感染后下调的miRNA和8个与免疫和炎症相关的上调miRNA。miRNA-mRNA网络显示,mRNA靶基因受ssc-miR-214、ssc-miR-199b-3p和ssc-miR-199a-3p的强烈调控。通过KEGG富集分析,mRNA靶基因富集到MAPK信号通路、Toll样受体信号通路、TNF信号通路和IL-17信号通路中。因此,ASFV可通过诱导miRNA的差异表达来调节感染猪的免疫和代谢相关通路。这些结果为进一步阐明ASFV与宿主之间的相互作用以及ASFV的免疫调节机制提供了新的依据,将有助于更好地控制ASF。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ba3/10093425/eabc61c3daa5/animals-13-01246-g001.jpg

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