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泛癌分析揭示 IGFL2 可作为癌症预后和免疫治疗的潜在靶点。

Pan-cancer analysis reveals IGFL2 as a potential target for cancer prognosis and immunotherapy.

机构信息

School of Public Health, Inner Mongolia Medical University, Hohhot, China.

Department of Pathology, School of Basic Medicine, Inner Mongolia Medical University, Hohhot, China.

出版信息

Sci Rep. 2023 Apr 13;13(1):6034. doi: 10.1038/s41598-023-27602-7.

DOI:10.1038/s41598-023-27602-7
PMID:37055418
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10101991/
Abstract

Insulin-like growth factor like family member 2 (IGFL2) is a gene in the IGFL family, located on chromosome 19, whose role in cancer is unclear, and the aim of this study was to investigate the relevance of IGFL2 expression, prognosis, immunity, and mutation in pan-cancer. Obtaining information from The Cancer Genome Atlas and The Genotype-Tissue Expression Project (GTEx) databases for expression analysis and combining with The Gene Expression Profile Interaction Analysis database for prognostic aspects. Analysis of immune cell infiltration by TIMER and CIBERSORT algorithms. Calculation of correlation of immune-related genes with IGFL2 expression and tumor mutational burden and microsatellite instability. Mutations and DNA methylation were analyzed using the cBioPortal database and the UALCAN database, and functional enrichment was performed using Gene set enrichment analysis (GSEA). IGFL2 expression is significantly elevated in tumor tissue and high expression has a worse prognosis in most cancers. In immune correlation analysis, it was associated with most immune cells and immune-related genes. In most cancers, IGFL2 methylation is lower and the group with mutations in IGFL2 has a worse prognosis than the normal group. The GSEA analysis showed that IGFL2 was significantly enriched in signaling and metabolism. IGFL2 may be involved in the development of many types of cancer, influencing the course of cancer with different biological functions. It may also be a biomarker for tumor immunotherapy.

摘要

胰岛素样生长因子样家族成员 2(IGFL2)是 IGFL 家族中的一个基因,位于染色体 19 上,其在癌症中的作用尚不清楚,本研究旨在探讨 IGFL2 表达、预后、免疫和突变在泛癌中的相关性。从癌症基因组图谱和基因型组织表达项目(GTEx)数据库中获取表达分析信息,并与基因表达谱相互作用分析数据库相结合进行预后分析。通过 TIMER 和 CIBERSORT 算法分析免疫细胞浸润情况。计算免疫相关基因与 IGFL2 表达和肿瘤突变负担及微卫星不稳定性的相关性。使用 cBioPortal 数据库和 UALCAN 数据库分析突变和 DNA 甲基化,并使用基因集富集分析(GSEA)进行功能富集。IGFL2 在肿瘤组织中的表达明显升高,在大多数癌症中高表达预示着预后较差。在免疫相关性分析中,它与大多数免疫细胞和免疫相关基因相关。在大多数癌症中,IGFL2 的甲基化水平较低,且 IGFL2 突变组的预后比正常组差。GSEA 分析表明,IGFL2 在信号和代谢中显著富集。IGFL2 可能参与多种类型癌症的发生,通过不同的生物学功能影响癌症的进程。它也可能是肿瘤免疫治疗的生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/6c8f13a53ed6/41598_2023_27602_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/4b898fb79cae/41598_2023_27602_Fig1_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/cbe60e315c39/41598_2023_27602_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/7013b8b7e6ae/41598_2023_27602_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/6c8f13a53ed6/41598_2023_27602_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/4b898fb79cae/41598_2023_27602_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/50f3fc581575/41598_2023_27602_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/c46c2cdeef05/41598_2023_27602_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/31c244340761/41598_2023_27602_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/cbe60e315c39/41598_2023_27602_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/7013b8b7e6ae/41598_2023_27602_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/906c/10101991/6c8f13a53ed6/41598_2023_27602_Fig7_HTML.jpg

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