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机器学习揭示了肺腺癌中的铁死亡特征和基于铁死亡相关基因的免疫微环境。

Machine learning revealed ferroptosis features and ferroptosis-related gene-based immune microenvironment in lung adenocarcinoma.

机构信息

The Marine Biomedical Research Institute, Guangdong Medical University, Zhanjiang, Guangdong, 524023, China; The Marine Biomedical Research Institute of Guangdong Zhanjiang, Zhanjiang, Guangdong, 524023, China.

The First Clinical College, Guangdong Medical University, Zhanjiang, Guangdong, 524023, China.

出版信息

Chem Biol Interact. 2023 Jun 1;378:110471. doi: 10.1016/j.cbi.2023.110471. Epub 2023 Apr 13.

DOI:10.1016/j.cbi.2023.110471
PMID:37061114
Abstract

Ferroptosis has been identified as a novel type of programmed cell death that has a major effect on the development of lung adenocarcinoma. Nevertheless, there has yet to be a clear set of therapeutic targets based on ferroptosis. This study seeks to employ machine learning methods to determine the regulators of ferroptosis in LUAD. 318 LUAD samples were investigated to determine three ferroptosis molecular phenotypes in LUAD, and then Boruta dimensionality reduction combined with principal component analysis was used to measure the ferroptosis regulation score (FRS) of patients. We additionally presented DeepFerr, a deep learning neural network model, which used the transcriptome map of 11 ferroptosis regulators to predict ferroptosis in LUAD. LASSO, SVM-RFE and elastic net were used to dissect the differential ferroptosis regulators, and the eight pivotal ferroptosis regulators have considerable ferroptosis prediction ability. It was established that RRM2 and AURKA are key suppressors of ferroptosis, and the depletion of RRM2 and AURKA caused an increase in ferroptosis in H358 cells. In addition, not only did they act as pro-proliferative factors that hindered immune infiltration in LUAD, but they were also essential for anti-PD1 therapy and chemotherapy. In summary, this research confirms the regulatory role of RRM2 and AURKA in ferroptosis, and could be useful in predicting individualized treatment for patients with LUAD.

摘要

铁死亡已被确定为一种新型的程序性细胞死亡方式,对肺腺癌的发展有重大影响。然而,基于铁死亡的治疗靶点尚未明确。本研究旨在采用机器学习方法确定 LUAD 中的铁死亡调控因子。 研究调查了 318 个 LUAD 样本,以确定 LUAD 中的三种铁死亡分子表型,然后使用 Boruta 降维和主成分分析来测量患者的铁死亡调控评分(FRS)。我们还介绍了 DeepFerr,这是一种深度学习神经网络模型,它使用 11 个铁死亡调控因子的转录组图谱来预测 LUAD 中的铁死亡。LASSO、SVM-RFE 和弹性网络用于剖析差异铁死亡调控因子,这 8 个关键铁死亡调控因子具有相当的铁死亡预测能力。研究表明,RRM2 和 AURKA 是铁死亡的关键抑制因子,耗尽 RRM2 和 AURKA 会导致 H358 细胞中铁死亡的增加。此外,它们不仅作为促进 LUAD 中增殖的因素,阻碍了免疫浸润,而且对抗 PD1 治疗和化疗也是必不可少的。 综上所述,本研究证实了 RRM2 和 AURKA 在铁死亡中的调控作用,可用于预测 LUAD 患者的个体化治疗。

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