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细菌蛋白质合成起始的动力学

Kinetics of initiation of bacterial protein synthesis.

作者信息

Blumberg B M, Nakamoto T, Kézdy F J

出版信息

Proc Natl Acad Sci U S A. 1979 Jan;76(1):251-5. doi: 10.1073/pnas.76.1.251.

DOI:10.1073/pnas.76.1.251
PMID:370825
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC382916/
Abstract

The 30S initiation complex, formed with the 30S ribosomal subunit, mRNA, and fMet-tRNA, has been shown by kinetic analysis with limiting concentrations of Escherichia coli ribosomes to be an obligatory intermediate in the formation of the 70S initiation complex. The formation of the 70S initiation complex began with an induction period and was proportional to the concentration of the 30S complex, which rapidly rose to a peak. The entire time course of the sequential pseudo-first-order, second-order reaction was reproduced accurately by the overall rate expression, in which we used rate constants that were determined by carrying out 30S and 70S complex formation separately. By using limiting concentrations of mRNA, we showed that phage MS2 RNA contained no specific signal that enhanced its rate of 30S complex formation with E. coli ribosomes and initiation factors; the pseudo-first-order rate constants obtained with poly(A3C9G1U1), poly(C15G1U4), and poly(G1U3) were 12-45 times higher than that with MS2 RNA. The observation that the rate constants for binding of fMet-tRNA and AcPhe-tRNA with a given synthetic RNA were comparable indicated that the initiator codon is recognized only indirectly through the initiator tRNA.

摘要

通过对大肠杆菌核糖体的极限浓度进行动力学分析表明,由30S核糖体亚基、mRNA和fMet - tRNA形成的30S起始复合物是70S起始复合物形成过程中的一个必经中间体。70S起始复合物的形成始于一个诱导期,且与30S复合物的浓度成正比,30S复合物的浓度迅速上升至峰值。通过总体速率表达式能够准确再现连续的准一级、二级反应的整个时间进程,在该表达式中,我们使用了分别通过进行30S和70S复合物形成所确定的速率常数。通过使用mRNA的极限浓度,我们表明噬菌体MS2 RNA不包含能提高其与大肠杆菌核糖体和起始因子形成30S复合物速率的特定信号;用聚(A3C9G1U1)、聚(C15G1U4)和聚(G1U3)获得的准一级速率常数比用MS2 RNA获得的高12 - 45倍。关于fMet - tRNA和AcPhe - tRNA与给定合成RNA结合的速率常数具有可比性的观察结果表明,起始密码子仅通过起始tRNA间接被识别。

相似文献

1
Kinetics of initiation of bacterial protein synthesis.细菌蛋白质合成起始的动力学
Proc Natl Acad Sci U S A. 1979 Jan;76(1):251-5. doi: 10.1073/pnas.76.1.251.
2
Kinetic evidence for the obligatory formation of a 30S initiation complex in polyphenylalanine synthesis initiated with N-acetylphenylalanyl-5RNA.在由N-乙酰苯丙氨酰-5RNA起始的聚苯丙氨酸合成中30S起始复合物形成的必要性的动力学证据。
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Initial rate kinetic analysis of the mechanism of initiation complex formation and the role of initiation factor IF-3.起始复合物形成机制及起始因子IF-3作用的初始速率动力学分析
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4
On the accessibility and selection of the initiator site of mRNA in protein synthesis.关于蛋白质合成中mRNA起始位点的可及性与选择
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Relationship between size of mRNA ribosomal binding site and initiation factor function.信使核糖核酸核糖体结合位点大小与起始因子功能之间的关系。
Biochimie. 1987 Sep;69(9):957-63. doi: 10.1016/0300-9084(87)90229-x.
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Kinetic studies of the rates and mechanism of assembly of the protein synthesis initiation complex.蛋白质合成起始复合物组装速率及机制的动力学研究。
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Translation of mRNAs with degenerate initiation triplet AUU displays high initiation factor 2 dependence and is subject to initiation factor 3 repression.起始三联体为简并形式AUU的mRNA的翻译表现出对起始因子2的高度依赖性,并受到起始因子3的抑制。
Proc Natl Acad Sci U S A. 1993 May 1;90(9):4161-5. doi: 10.1073/pnas.90.9.4161.
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The conformation of the initiator tRNA and of the 16S rRNA from Escherichia coli during the formation of the 30S initiation complex.在30S起始复合物形成过程中大肠杆菌起始tRNA和16S rRNA的构象。
Biochim Biophys Acta. 1990 Aug 27;1050(1-3):84-92. doi: 10.1016/0167-4781(90)90146-s.
10
The role of the codon and the initiation factor IF-2 in the selection of N-blocked aminoacyl-tRNA for initiation.
Eur J Biochem. 1980 Feb;104(1):19-33. doi: 10.1111/j.1432-1033.1980.tb04394.x.

引用本文的文献

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GTP hydrolysis by IF2 guides progression of the ribosome into elongation.IF2介导的GTP水解引导核糖体进入延伸阶段。
Mol Cell. 2009 Jul 10;35(1):37-47. doi: 10.1016/j.molcel.2009.06.008.
2
Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs.70S核糖体起始翻译:无领导mRNA的另一条途径。
Nucleic Acids Res. 2004 Jun 23;32(11):3354-63. doi: 10.1093/nar/gkh663. Print 2004.
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Ribosome formation from subunits studied by stopped-flow and Rayleigh light scattering.通过停流法和瑞利光散射研究核糖体亚基的形成。
Biol Proced Online. 2004;6:35-54. doi: 10.1251/bpo71. Epub 2004 Mar 19.
4
The roles of initiation factor 2 and guanosine triphosphate in initiation of protein synthesis.起始因子2和三磷酸鸟苷在蛋白质合成起始过程中的作用。
EMBO J. 2003 Oct 15;22(20):5593-601. doi: 10.1093/emboj/cdg525.
5
Distribution of 5'-triphosphate termini on the mRNA of Escherichia coli.5'-三磷酸末端在大肠杆菌mRNA上的分布
J Bacteriol. 1989 Jan;171(1):141-7. doi: 10.1128/jb.171.1.141-147.1989.
6
New genes and promoters suggested by the DNA sequence near the end of the coliphage T7 early operon.大肠杆菌噬菌体T7早期操纵子末端附近的DNA序列所提示的新基因和启动子。
Nucleic Acids Res. 1979 Dec 11;7(7):1931-43. doi: 10.1093/nar/7.7.1931.

本文引用的文献

1
The initiation of viral protein synthesis in e. Coli extracts.大肠杆菌提取物中病毒蛋白质合成的起始
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Fractionation of translation initiation factor B (F3) into cistron-specific species.将翻译起始因子B(F3)分离为顺反子特异性物种。
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Studies on polynucleotides. LXVII. Initiation of protein synthesis in vitro as studied by using ribopolynucleotides with repeating nucleotide sequences as messengers.多核苷酸研究。第六十七部分。以具有重复核苷酸序列的核糖多核苷酸作为信使,对体外蛋白质合成起始的研究。
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A possible mechanism for initiation of protein synthesis.蛋白质合成起始的一种可能机制。
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Initiation of protein synthesis: a critical test of the 30S subunit model.蛋白质合成的起始:对30S亚基模型的关键检验。
Nature. 1968 Jul 20;219(5151):232-5. doi: 10.1038/219232a0.
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Treatment of enzyme kinetic data. 3. The use of the full time course of a reaction, as examined by computer simulation, in defining enzyme mechanisms.酶动力学数据的处理。3. 通过计算机模拟研究反应的整个时间进程在确定酶作用机制中的应用。
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Inhibition of N-acetylphenylalanyl transfer ribonucleic acid binding to 30S ribosomal subunit of Escherichia coli by N-formylmethionyl transfer ribonucleic acid.N-甲酰甲硫氨酰转移核糖核酸对N-乙酰苯丙氨酰转移核糖核酸与大肠杆菌30S核糖体亚基结合的抑制作用。
Biochemistry. 1974 Jul 30;13(16):3307-11. doi: 10.1021/bi00713a020.
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Sequence and symmetry in ribosome binding sites of bacteriophage f1 RNA.噬菌体f1 RNA核糖体结合位点的序列与对称性
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Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene.噬菌体MS2 RNA的完整核苷酸序列:复制酶基因的一级和二级结构
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