Department of Biology, Faculty of Science, Mahasarakham University, Maha Sarakham Province, 44150, Thailand.
Department of Medical Biotechnology, College of Medicine and Public Health, Flinders University, Bedford Park, Adelaide, 5042, Australia.
Int J Syst Evol Microbiol. 2023 Apr;73(4). doi: 10.1099/ijsem.0.005834.
An endophytic actinobacterium, strain PIP175, was isolated from the root sample of a native apricot tree () growing on the Bedford Park campus of Flinders University, Adelaide, South Australia. This strain is a Gram stain-positive, aerobic actinobacterium with well-developed substrate mycelia. Aerial mycelia rarely produce spores and the spore chain is spiral. Strain PIP175 showed the highest 16S rRNA gene sequence similarity to DSM 41644 (99.4 %). Other closely related phylogenetic representatives include DSM 41902 (98.3 %), NBRC 13846 (97.6 %), subsp. NRRL B-1220 (97.5 %) and NBRC 14600 (97.4 %). The major cellular fatty acid of this strain was iso-C and the major menaquinone was MK-9(H). The whole-cell sugar contained galactose, glucose and mannose. Chemotaxonomic data confirmed that strain PIP175 belonged to the genus . Digital DNA-DNA hybridization, average nucleotide identity based on blast and OrthoANIu results between strain PIP175 and DSM 41644 were 60.0, 94.1 and 94.9 %, respectively. Genotypic and phenotypic data and genome analysis results allowed the differentiation of strain PIP175 from its closest species with validly published names. Strain PIP175 showed good activity against methicillin-resistant 03120385. Genome mining of strain PIP175 revealed biosynthetic genes encoding proteins relating to antibiotic production, plant growth promotion and biodegradation enzymes. The name proposed for the new species is sp. nov. The type strain is PIP175 (=DSM 103379=TBRC 6026).
一株内共生放线菌,菌株 PIP175,从生长在南澳大利亚阿德莱德弗林德斯大学贝德福德公园校区的土生土长的杏树根样中分离得到。该菌株是革兰氏阳性、需氧放线菌,具有发育良好的基质菌丝。气生菌丝很少产生孢子,孢子链呈螺旋状。菌株 PIP175 与 DSM 41644 的 16S rRNA 基因序列相似度最高,为 99.4%。其他密切相关的系统发育代表包括 DSM 41902(98.3%)、NBRC 13846(97.6%)、subsp. NRRL B-1220(97.5%)和 NBRC 14600(97.4%)。该菌株的主要细胞脂肪酸为 iso-C,主要的menaquinone 为 MK-9(H)。全细胞糖含有半乳糖、葡萄糖和甘露糖。化学分类数据证实,菌株 PIP175 属于 属。菌株 PIP175 与 DSM 41644 之间的 DNA-DNA 杂交值、blast 基于核苷酸的平均同一性和 OrthoANIu 结果分别为 60.0、94.1 和 94.9%。基因型和表型数据以及基因组分析结果允许将菌株 PIP175 与具有有效发表名称的最接近的种区分开来。菌株 PIP175 对耐甲氧西林的 03120385 表现出良好的活性。对菌株 PIP175 的基因组挖掘揭示了编码与抗生素产生、植物生长促进和生物降解酶相关的蛋白的生物合成基因。新种的命名建议为 sp. nov.。模式菌株为 PIP175(=DSM 103379=TBRC 6026)。