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利用人工智能驱动的泛物种计算病理学将临床与野生动物护理联系起来。

Bridging clinic and wildlife care with AI-powered pan-species computational pathology.

机构信息

Centre for Evolution and Cancer, The Institute of Cancer Research, London, UK.

Division of Molecular Pathology, The Institute of Cancer Research, London, UK.

出版信息

Nat Commun. 2023 Apr 26;14(1):2408. doi: 10.1038/s41467-023-37879-x.

DOI:10.1038/s41467-023-37879-x
PMID:37100774
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10133243/
Abstract

Cancers occur across species. Understanding what is consistent and varies across species can provide new insights into cancer initiation and evolution, with significant implications for animal welfare and wildlife conservation. We build a pan-species cancer digital pathology atlas (panspecies.ai) and conduct a pan-species study of computational comparative pathology using a supervised convolutional neural network algorithm trained on human samples. The artificial intelligence algorithm achieves high accuracy in measuring immune response through single-cell classification for two transmissible cancers (canine transmissible venereal tumour, 0.94; Tasmanian devil facial tumour disease, 0.88). In 18 other vertebrate species (mammalia = 11, reptilia = 4, aves = 2, and amphibia = 1), accuracy (range 0.57-0.94) is influenced by cell morphological similarity preserved across different taxonomic groups, tumour sites, and variations in the immune compartment. Furthermore, a spatial immune score based on artificial intelligence and spatial statistics is associated with prognosis in canine melanoma and prostate tumours. A metric, named morphospace overlap, is developed to guide veterinary pathologists towards rational deployment of this technology on new samples. This study provides the foundation and guidelines for transferring artificial intelligence technologies to veterinary pathology based on understanding of morphological conservation, which could vastly accelerate developments in veterinary medicine and comparative oncology.

摘要

癌症存在于各个物种中。了解物种间一致和不同的地方,可以为癌症的发生和进化提供新的见解,这对动物福利和野生动物保护具有重要意义。我们构建了一个泛物种癌症数字病理学图谱(panspecies.ai),并使用基于人类样本训练的监督卷积神经网络算法对计算比较病理学进行了泛物种研究。该人工智能算法通过单细胞分类对两种传染性癌症(犬传染性性病肿瘤,0.94;塔斯马尼亚恶魔面部肿瘤病,0.88)的免疫反应测量具有很高的准确性。在其他 18 种脊椎动物物种中(哺乳类 = 11,爬行类 = 4,鸟类 = 2,两栖类 = 1),准确性(范围为 0.57-0.94)受到跨不同分类群、肿瘤部位和免疫区室变化保留的细胞形态相似性的影响。此外,基于人工智能和空间统计学的空间免疫评分与犬黑色素瘤和前列腺肿瘤的预后相关。开发了一种名为形态空间重叠的度量标准,以指导兽医病理学家在新样本上合理部署这项技术。这项研究为基于形态学保护理解将人工智能技术转移到兽医病理学提供了基础和指导,这将极大地加速兽医和比较肿瘤学的发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/358fec5db14c/41467_2023_37879_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/3d3379593bff/41467_2023_37879_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/f91b2770a5b9/41467_2023_37879_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/c57f9392fb9f/41467_2023_37879_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/0f3d8843ac94/41467_2023_37879_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/387837f373f4/41467_2023_37879_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/358fec5db14c/41467_2023_37879_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/3d3379593bff/41467_2023_37879_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/f91b2770a5b9/41467_2023_37879_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/c57f9392fb9f/41467_2023_37879_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/0f3d8843ac94/41467_2023_37879_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/387837f373f4/41467_2023_37879_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5450/10133243/358fec5db14c/41467_2023_37879_Fig6_HTML.jpg

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