Cancer Data Science Laboratory (CDSL), National Cancer Institute (NCI), National Institutes of Health (NIH), Bethesda, MD, USA.
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA.
Sci Adv. 2022 Aug 5;8(31):eabj7176. doi: 10.1126/sciadv.abj7176. Epub 2022 Aug 3.
Cancer is a predominant disease across animals. We applied a comparative genomics approach to systematically characterize genes whose conservation levels correlate positively (PC) or negatively (NC) with cancer resistance estimates across 193 vertebrates. Pathway analysis reveals that NC genes are enriched for metabolic functions and PC genes in cell cycle regulation, DNA repair, and immune response, pointing to their corresponding roles in mediating cancer risk. We find that PC genes are less tolerant to loss-of-function (LoF) mutations, are enriched in cancer driver genes, and are associated with germline mutations that increase human cancer risk. Their relevance to cancer risk is further supported via the analysis of mouse functional genomics and cancer mortality of zoo mammals' data. In sum, our study describes a cross-species genomic analysis pointing to candidate genes that may mediate human cancer risk.
癌症是一种在动物中普遍存在的疾病。我们采用比较基因组学的方法,系统地描述了那些与 193 种脊椎动物的癌症抗性估计值呈正相关(PC)或负相关(NC)的基因。通路分析表明,NC 基因富集了代谢功能,PC 基因富集了细胞周期调控、DNA 修复和免疫反应,这表明它们在调节癌症风险方面具有相应的作用。我们发现 PC 基因对功能丧失(LoF)突变的耐受性较低,富集在癌症驱动基因中,与增加人类癌症风险的种系突变有关。通过对小鼠功能基因组学和动物园哺乳动物癌症死亡率的分析,进一步证实了它们与癌症风险的相关性。总之,我们的研究描述了一种跨物种的基因组分析,指出了可能介导人类癌症风险的候选基因。