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头孢地尔对多重耐药菌株的体外活性及两株头孢地尔耐药菌株的基因组分析

In Vitro Activity of Cefiderocol on Multiresistant Bacterial Strains and Genomic Analysis of Two Cefiderocol Resistant Strains.

作者信息

Padovani Michela, Bertelli Anna, Corbellini Silvia, Piccinelli Giorgio, Gurrieri Francesca, De Francesco Maria Antonia

机构信息

Institute of Microbiology, Department of Molecular and Translational Medicine, University of Brescia-ASST Spedali Civili, 25123 Brescia, Italy.

出版信息

Antibiotics (Basel). 2023 Apr 20;12(4):785. doi: 10.3390/antibiotics12040785.

Abstract

Cefiderocol is a new siderophore cephalosporin that is effective against multidrug-resistant Gram-negative bacteria, including carbapenem-resistant strains. The aim of this study was to evaluate the activity of this new antimicrobial agent against a collection of pathogens using broth microdilution assays and to analyze the possible mechanism of cefiderocol resistance in two resistant isolates. One hundred and ten isolates were tested, comprising 67 , two , one , 33 and seven Cefiderocol showed good in vitro activity, with an MIC < 2 μg/mL, and was able to inhibit 94% of the tested isolates. We observed a resistance rate of 6%. The resistant isolates consisted of six and one , leading to a resistance rate of 10.4% among the Enterobacterales. Whole-genome sequencing analysis was performed on two cefiderocol-resistant isolates to investigate the possible mutations responsible for the observed resistance. Both strains belonged to ST383 and harbored different resistant and virulence genes. The analysis of genes involved in iron uptake and transport showed the presence of different mutations located in A, A, A, A, C, C, G, C, B, I, J, and L. Furthermore, for the first time, to the best of our knowledge, we described two isolates that synthesize a truncated fecA protein due to the transition from G to A, leading to a premature stop codon in the amino acid position 569, and a TonB protein carrying a 4-amino acid insertion (PKPK) after Lysine 103. In conclusion, our data show that cefiderocol is an effective drug against multidrug-resistant Gram-negative bacteria. However, the higher resistance rate observed in underlines the need for active surveillance to limit the spread of these pathogens and to avoid the risks associated with the emergence of resistance to new drugs.

摘要

头孢地尔是一种新型的铁载体头孢菌素,对多重耐药革兰氏阴性菌有效,包括耐碳青霉烯类菌株。本研究的目的是使用肉汤微量稀释法评估这种新型抗菌剂对一系列病原体的活性,并分析两株耐药菌株中头孢地尔耐药的可能机制。测试了110株分离株,包括67株[具体细菌种类1]、2株[具体细菌种类2]、1株[具体细菌种类3]、33株[具体细菌种类4]和7株[具体细菌种类5]。头孢地尔在体外表现出良好的活性,MIC<2μg/mL,能够抑制94%的测试分离株。我们观察到耐药率为6%。耐药分离株包括6株[具体细菌种类6]和1株[具体细菌种类7],导致肠杆菌科细菌中的耐药率为10.4%。对两株头孢地尔耐药的[具体细菌种类8]分离株进行了全基因组测序分析,以研究导致观察到的耐药性的可能突变。两株菌株均属于ST383,携带不同的耐药和毒力基因。对参与铁摄取和转运的基因分析表明,在A、A、A、A、C、C、G、C、B、I、J和L中存在不同的突变。此外,据我们所知,首次描述了两株[具体细菌种类9]分离株,由于从G到A的转变,合成了截短的fecA蛋白,导致在氨基酸位置569处出现过早的终止密码子,以及一种在赖氨酸103之后携带4个氨基酸插入(PKPK)的TonB蛋白。总之,我们的数据表明头孢地尔是一种对抗多重耐药革兰氏阴性菌有效的药物。然而,在[具体细菌种类10]中观察到的较高耐药率强调了进行主动监测以限制这些病原体传播并避免与新药耐药性出现相关风险的必要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4269/10135176/89a10971e54a/antibiotics-12-00785-g001.jpg

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