Two enhancer binding proteins activate σ-dependent transcription of a quorum regulatory RNA in a bacterial symbiont.

To colonize a host, bacteria depend on an ensemble of signaling systems to convert information about the various environments encountered within the host into specific cellular activities. How these signaling systems coordinate transitions between cellular states in vivo remains poorly understood. To address this knowledge gap, we investigated how the bacterial symbiont initially colonizes the light organ of the Hawaiian bobtail squid . Previous work has shown that the small RNA Qrr1, which is a regulatory component of the quorum-sensing system in , promotes host colonization. Here, we report that transcriptional activation of Qrr1 is inhibited by the sensor kinase BinK, which suppresses cellular aggregation by prior to light organ entry. We show that Qrr1 expression depends on the alternative sigma factor σ and the transcription factors LuxO and SypG, which function similar to an OR logic gate, thereby ensuring Qrr1 is expressed during colonization. Finally, we provide evidence that this regulatory mechanism is widespread throughout the family. Together, our work reveals how coordination between the signaling pathways underlying aggregation and quorum-sensing promotes host colonization, which provides insight into how integration among signaling systems facilitates complex processes in bacteria.