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一种经过改进的基于绿色荧光蛋白(GFP)的载体,用于嗜热葡糖苷芽孢杆菌的基因工程,有助于鉴定关键的芽孢形成调节因子。

An improved integrative GFP-based vector for genetic engineering of Parageobacillus thermoglucosidasius facilitates the identification of a key sporulation regulator.

作者信息

Millgaard Marie, Bidart Gonzalo Nahuel, Pogrebnyakov Ivan, Nielsen Alex Toftgaard, Welner Ditte Hededam

机构信息

The Novo Nordisk Foundation Center for Biosustainability, Building 220, Kemitorvet, 2800, Kgs. Lyngby, Denmark.

出版信息

AMB Express. 2023 May 8;13(1):44. doi: 10.1186/s13568-023-01544-9.

DOI:10.1186/s13568-023-01544-9
PMID:37154828
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10167077/
Abstract

Parageobacillus thermoglucosidasius is a thermophilic Gram-positive bacterium, which is a promising host organism for sustainable bio-based production processes. However, to take full advantage of the potential of P. thermoglucosidasius, more efficient tools for genetic engineering are required. The present study describes an improved shuttle vector, which speeds up recombination-based genomic modification by incorporating a thermostable sfGFP variant into the vector backbone. This additional selection marker allows for easier identification of recombinants, thereby removing the need for several culturing steps. The novel GFP-based shuttle is therefore capable of facilitating faster metabolic engineering of P. thermoglucosidasius through genomic deletion, integration, or exchange. To demonstrate the efficiency of the new system, the GFP-based vector was utilised for deletion of the spo0A gene in P. thermoglucosidasius DSM2542. This gene is known to be a key regulator of sporulation in Bacillus subtilis, and it was therefore hypothesised that the deletion of spo0A in P. thermoglucosiadius would produce an analogous sporulation-inhibited phenotype. Subsequent analyses of cell morphology and culture heat resistance suggests that the P. thermoglucosidasius ∆spo0A strain is sporulation-deficient. This strain may be an excellent starting point for future cell factory engineering of P. thermoglucosidasius, as the formation of endospores is normally not a desired trait in large-scale production.

摘要

嗜热葡糖苷酶解芽孢杆菌是一种嗜热革兰氏阳性细菌,是可持续生物基生产过程中一种很有前景的宿主生物。然而,为了充分利用嗜热葡糖苷酶解芽孢杆菌的潜力,需要更有效的基因工程工具。本研究描述了一种改进的穿梭载体,通过将一种耐热的超折叠绿色荧光蛋白(sfGFP)变体整合到载体骨架中,加快了基于重组的基因组修饰。这个额外的选择标记使得重组体的鉴定更容易,从而无需几个培养步骤。因此,这种新型的基于绿色荧光蛋白的穿梭载体能够通过基因组缺失、整合或交换,促进嗜热葡糖苷酶解芽孢杆菌更快的代谢工程改造。为了证明新系统的效率,基于绿色荧光蛋白的载体被用于删除嗜热葡糖苷酶解芽孢杆菌DSM2542中的spo0A基因。已知该基因是枯草芽孢杆菌中芽孢形成的关键调节因子,因此推测在嗜热葡糖苷酶解芽孢杆菌中删除spo0A会产生类似的芽孢形成抑制表型。随后对细胞形态和培养耐热性的分析表明,嗜热葡糖苷酶解芽孢杆菌∆spo0A菌株缺乏芽孢形成能力。由于在大规模生产中,内生孢子的形成通常不是一个理想的特性,该菌株可能是未来嗜热葡糖苷酶解芽孢杆菌细胞工厂工程的一个很好的起点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/78b65dc32f67/13568_2023_1544_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/c83166c0e41d/13568_2023_1544_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/8e43a174de9e/13568_2023_1544_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/2ecc287f2ff1/13568_2023_1544_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/37be52d61633/13568_2023_1544_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/eade16d7cfde/13568_2023_1544_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/4675af3e5a95/13568_2023_1544_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/69d72e8e3bf9/13568_2023_1544_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/78b65dc32f67/13568_2023_1544_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/c83166c0e41d/13568_2023_1544_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/8e43a174de9e/13568_2023_1544_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/2ecc287f2ff1/13568_2023_1544_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/37be52d61633/13568_2023_1544_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/eade16d7cfde/13568_2023_1544_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/4675af3e5a95/13568_2023_1544_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/69d72e8e3bf9/13568_2023_1544_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee35/10167077/78b65dc32f67/13568_2023_1544_Fig8_HTML.jpg

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