• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

谷氨酸配位 O-耐受 [NiFe]-氢化酶的完全氧化态显示 Ni(III)/Fe(III)开壳单线态基态。

The Fully Oxidized State of the Glutamate Coordinated O-Tolerant [NiFe]-Hydrogenase Shows a Ni(III)/Fe(III) Open-Shell Singlet Ground State.

机构信息

Max Planck Institute for Dynamics of Complex Technical Systems, Molecular Simulations and Design Group, Sandtorstrasse 1, 39106 Magdeburg, Germany.

出版信息

J Am Chem Soc. 2023 May 24;145(20):10954-10959. doi: 10.1021/jacs.3c02438. Epub 2023 May 9.

DOI:10.1021/jacs.3c02438
PMID:37159341
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10214449/
Abstract

The oxygen tolerance of the [NiFe]-hydrogenase from was recently assigned to originate from an unusual coordination sphere of the active site nickel atom (Shomura et al. , , 928-932, 10.1126/science.aan4497). In the oxidized state, a terminal cysteine residue is displaced by a bidentate coordinating nearby Glu32 and thus moves to occupy a third μ-cysteine bridging position. Spectral features of the oxidized state were assigned to originate from a closed-shell Ni(IV)/Fe(II) state (Kulka-Peschke et al. , , 17022-17032, 10.1021/jacs.2c06400). Such a high-valent nickel oxidation state is unprecedented in biological systems. The spectral properties and the coordination sphere of that [NiFe]-hydrogenase can, however, also be rationalized by an energetically lower broken-symmetry Ni(III)/Fe(III) state of the active site which was not considered. In this open-shell singlet, the ligand-mediated antiferromagnetic spin-coupling leads to an overall = 0 spin state with evenly distributed spin densities over the metal atoms. Experiments are suggested that may clarify the final assignment of redox states.

摘要

最近,来自[NiFe]-氢化酶的氧耐受性被归因于活性位点镍原子的不寻常配位球(Shomura 等人,[],928-932,10.1126/science.aan4497)。在氧化态下,末端半胱氨酸残基被双齿配位的附近 Glu32 取代,从而移动到占据第三个μ-半胱氨酸桥接位置。氧化态的光谱特征被归因于封闭壳 Ni(IV)/Fe(II)态(Kulka-Peschke 等人,[],17022-17032,10.1021/jacs.2c06400)。在生物系统中,这种高价镍氧化态是前所未有的。然而,该[NiFe]-氢化酶的光谱性质和配位球也可以通过未考虑的活性位点的能量较低的非对称 Ni(III)/Fe(III)态来合理化。在这种开壳单线态中,配体介导的反铁磁自旋偶合导致整体 = 0 自旋态,金属原子上的自旋密度均匀分布。建议进行实验,以澄清氧化还原态的最终归属。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/baceb508f1c1/ja3c02438_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/1a485a73c223/ja3c02438_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/18f2434ad960/ja3c02438_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/c2d783d14046/ja3c02438_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/baceb508f1c1/ja3c02438_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/1a485a73c223/ja3c02438_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/18f2434ad960/ja3c02438_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/c2d783d14046/ja3c02438_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ddeb/10214449/baceb508f1c1/ja3c02438_0004.jpg

相似文献

1
The Fully Oxidized State of the Glutamate Coordinated O-Tolerant [NiFe]-Hydrogenase Shows a Ni(III)/Fe(III) Open-Shell Singlet Ground State.谷氨酸配位 O-耐受 [NiFe]-氢化酶的完全氧化态显示 Ni(III)/Fe(III)开壳单线态基态。
J Am Chem Soc. 2023 May 24;145(20):10954-10959. doi: 10.1021/jacs.3c02438. Epub 2023 May 9.
2
[NiFe]-hydrogenases revisited: nickel-carboxamido bond formation in a variant with accrued O2-tolerance and a tentative re-interpretation of Ni-SI states.再探[镍铁]氢化酶:具有增强的氧气耐受性变体中镍-羧酰胺键的形成以及对镍-硫配体状态的初步重新解读
Metallomics. 2015 Apr;7(4):710-8. doi: 10.1039/c4mt00309h.
3
Reversible Glutamate Coordination to High-Valent Nickel Protects the Active Site of a [NiFe] Hydrogenase from Oxygen.谷氨酸可逆配位高价镍保护[NiFe]氢化酶活性中心免受氧的侵害。
J Am Chem Soc. 2022 Sep 21;144(37):17022-17032. doi: 10.1021/jacs.2c06400. Epub 2022 Sep 9.
4
Direct detection of a hydrogen ligand in the [NiFe] center of the regulatory H2-sensing hydrogenase from Ralstonia eutropha in its reduced state by HYSCORE and ENDOR spectroscopy.通过高场电子自旋回波包络调制(HYSCORE)和电子核双共振(ENDOR)光谱法直接检测处于还原态的嗜中性产碱杆菌(Ralstonia eutropha)中调节性H2感应氢化酶的[NiFe]中心的氢配体。
J Am Chem Soc. 2003 Oct 29;125(43):13075-83. doi: 10.1021/ja036624x.
5
An orientation-selected ENDOR and HYSCORE study of the Ni-C active state of Desulfovibrio vulgaris Miyazaki F hydrogenase.嗜热栖热放线菌宫崎F型氢化酶镍-C活性状态的取向选择电子核双共振和高分辨超精细相干谱研究。
J Biol Inorg Chem. 2005 Jan;10(1):51-62. doi: 10.1007/s00775-004-0613-5. Epub 2004 Dec 21.
6
Structural differences of oxidized iron-sulfur and nickel-iron cofactors in O2-tolerant and O2-sensitive hydrogenases studied by X-ray absorption spectroscopy.通过X射线吸收光谱法研究耐氧和对氧敏感的氢化酶中氧化态铁硫和镍铁辅因子的结构差异。
Biochim Biophys Acta. 2015 Feb;1847(2):162-170. doi: 10.1016/j.bbabio.2014.06.011. Epub 2014 Oct 12.
7
The crystal structure of the [NiFe] hydrogenase from the photosynthetic bacterium Allochromatium vinosum: characterization of the oxidized enzyme (Ni-A state).[镍铁]氢化酶的晶体结构来自光合细菌荚膜红假单胞菌:氧化酶(Ni-A 态)的特性。
J Mol Biol. 2010 Sep 17;402(2):428-44. doi: 10.1016/j.jmb.2010.07.041. Epub 2010 Jul 29.
8
Heterobimetallic [NiFe] Complexes Containing Mixed CO/CN Ligands: Analogs of the Active Site of the [NiFe] Hydrogenases.含有混合CO/CN配体的异双金属[NiFe]配合物:[NiFe]氢化酶活性位点的类似物。
Inorg Chem. 2018 Mar 5;57(5):2558-2569. doi: 10.1021/acs.inorgchem.7b02905. Epub 2018 Feb 21.
9
Controlling O Reactivity in Synthetic Analogues of [NiFeS]- and [NiFeSe]-Hydrogenase Active Sites.控制[NiFeS]-和[NiFeSe]-氢化酶活性中心的合成类似物中的 O 反应性。
J Am Chem Soc. 2019 Sep 25;141(38):15338-15347. doi: 10.1021/jacs.9b07448. Epub 2019 Sep 13.
10
[NiFe] and [FeS] cofactors in the membrane-bound hydrogenase of Ralstonia eutropha investigated by X-ray absorption spectroscopy: insights into O(2)-tolerant H(2) cleavage.[NiFe] 和 [FeS] 辅因子在 Ralstonia eutropha 膜结合氢化酶中的 X 射线吸收光谱研究:对耐 O(2) 的 H(2)裂解的深入了解。
Biochemistry. 2011 Jul 5;50(26):5858-69. doi: 10.1021/bi200367u. Epub 2011 Jun 10.

引用本文的文献

1
Comprehensive structural, infrared spectroscopic and kinetic investigations of the roles of the active-site arginine in bidirectional hydrogen activation by the [NiFe]-hydrogenase 'Hyd-2' from .对来自……的[NiFe]氢化酶“Hyd-2”中活性位点精氨酸在双向氢活化中的作用进行的全面结构、红外光谱和动力学研究。
Chem Sci. 2023 Jul 25;14(32):8531-8551. doi: 10.1039/d2sc05641k. eCollection 2023 Aug 16.

本文引用的文献

1
Reversible Glutamate Coordination to High-Valent Nickel Protects the Active Site of a [NiFe] Hydrogenase from Oxygen.谷氨酸可逆配位高价镍保护[NiFe]氢化酶活性中心免受氧的侵害。
J Am Chem Soc. 2022 Sep 21;144(37):17022-17032. doi: 10.1021/jacs.2c06400. Epub 2022 Sep 9.
2
Cofactor composition and function of a H-sensing regulatory hydrogenase as revealed by Mössbauer and EPR spectroscopy.通过穆斯堡尔谱和电子顺磁共振光谱揭示的氢传感调节氢化酶的辅因子组成和功能
Chem Sci. 2015 Aug 1;6(8):4495-4507. doi: 10.1039/c5sc01560j. Epub 2015 May 26.
3
Enzymatic and spectroscopic properties of a thermostable [NiFe]‑hydrogenase performing H-driven NAD-reduction in the presence of O.
在 O 的存在下进行 H 驱动的 NAD 还原反应的热稳定 [NiFe]-氢化酶的酶学和光谱性质。
Biochim Biophys Acta Bioenerg. 2018 Jan;1859(1):8-18. doi: 10.1016/j.bbabio.2017.09.006. Epub 2017 Sep 29.
4
Structural basis of the redox switches in the NAD-reducing soluble [NiFe]-hydrogenase.NAD 还原型可溶性 [NiFe]-氢化酶中氧化还原开关的结构基础。
Science. 2017 Sep 1;357(6354):928-932. doi: 10.1126/science.aan4497.
5
Valence Interconversion of Octahedral Nickel(II/III/IV) Centers.八面体镍(II/III/IV)中心的价态转换。
Angew Chem Int Ed Engl. 2017 Oct 23;56(44):13762-13766. doi: 10.1002/anie.201708169. Epub 2017 Sep 22.
6
The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis.硒代半胱氨酸在 [NiFeSe]氢化酶成熟和催化中的直接作用。
Nat Chem Biol. 2017 May;13(5):544-550. doi: 10.1038/nchembio.2335. Epub 2017 Mar 20.
7
Performance of a nonempirical density functional on molecules and hydrogen-bonded complexes.非经验密度泛函对分子和氢键复合物的性能研究
J Chem Phys. 2016 Dec 21;145(23):234306. doi: 10.1063/1.4971853.
8
Models of the Ni-L and Ni-SIa States of the [NiFe]-Hydrogenase Active Site.[NiFe] -氢化酶活性位点的Ni - L和Ni - SIa状态模型。
Inorg Chem. 2016 Jan 19;55(2):419-31. doi: 10.1021/acs.inorgchem.5b01662. Epub 2015 Sep 30.
9
Oxidation of Ni(II) to Ni(IV) with Aryl Electrophiles Enables Ni-Mediated Aryl-CF3 Coupling.芳基亲电试剂将 Ni(II)氧化为 Ni(IV)实现 Ni 介导的芳基-CF3 偶联。
J Am Chem Soc. 2015 Jul 1;137(25):8034-7. doi: 10.1021/jacs.5b04892. Epub 2015 Jun 16.
10
Infrared Spectroscopy During Electrocatalytic Turnover Reveals the Ni-L Active Site State During H2 Oxidation by a NiFe Hydrogenase.电催化周转过程中的红外光谱揭示了镍铁氢化酶催化氢气氧化过程中Ni-L活性位点的状态。
Angew Chem Int Ed Engl. 2015 Jun 8;54(24):7110-3. doi: 10.1002/anie.201502338. Epub 2015 Apr 29.