Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06511, USA.
Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Phys Rev E. 2023 Apr;107(4):L042601. doi: 10.1103/PhysRevE.107.L042601.
The control of biopolymer length is mediated by proteins that localize to polymer ends and regulate polymerization dynamics. Several mechanisms have been proposed to achieve end localization. Here, we propose a novel mechanism by which a protein that binds to a shrinking polymer and slows its shrinkage will be spontaneously enriched at the shrinking end through a "herding" effect. We formalize this process using both lattice-gas and continuum descriptions, and we present experimental evidence that the microtubule regulator spastin employs this mechanism. Our findings extend to more general problems involving diffusion within shrinking domains.
生物聚合物长度的控制是由定位在聚合物末端并调节聚合动力学的蛋白质介导的。已经提出了几种实现末端定位的机制。在这里,我们提出了一种新的机制,即通过“放牧”效应,结合到收缩聚合物并减缓其收缩的蛋白质将自发地在收缩端富集。我们使用晶格气体和连续体描述来形式化这个过程,并提出实验证据表明微管调节剂 spastin 采用了这种机制。我们的发现扩展到更普遍的涉及收缩域内扩散的问题。