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耦合振荡器协同作用作为生物钟生物学中的控制机制。

Coupled oscillator cooperativity as a control mechanism in chronobiology.

机构信息

Center for Cell and Gene Circuit Design, CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Niels Bohr Institute, University of Copenhagen, 2100 Copenhagen, Denmark.

Center for Cell and Gene Circuit Design, CAS Key Laboratory of Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.

出版信息

Cell Syst. 2023 May 17;14(5):382-391.e5. doi: 10.1016/j.cels.2023.04.001.

Abstract

Control of dynamical processes is vital for maintaining correct cell regulation and cell-fate decisions. Numerous regulatory networks show oscillatory behavior; however, our knowledge of how one oscillator behaves when stimulated by two or more external oscillatory signals is still missing. We explore this problem by constructing a synthetic oscillatory system in yeast and stimulate it with two external oscillatory signals. Letting model verification and prediction operate in a tight interplay with experimental observations, we find that stimulation with two external signals expands the plateau of entrainment and reduces the fluctuations of oscillations. Furthermore, by adjusting the phase differences of external signals, one can control the amplitude of oscillations, which is understood through the signal delay of the unperturbed oscillatory network. With this we reveal a direct amplitude dependency of downstream gene transcription. Taken together, these results suggest a new path to control oscillatory systems by coupled oscillator cooperativity.

摘要

控制动力学过程对于维持正确的细胞调节和细胞命运决策至关重要。许多调控网络表现出振荡行为;然而,我们对于一个振荡器在受到两个或多个外部振荡信号刺激时的行为知之甚少。我们通过在酵母中构建一个合成振荡系统来探索这个问题,并对其施加两个外部振荡信号。让模型验证和预测与实验观察紧密配合,我们发现,受到两个外部信号的刺激会扩展同步化的平台并减少振荡的波动。此外,通过调整外部信号的相位差,可以控制振荡的幅度,这可以通过未受干扰的振荡网络的信号延迟来理解。由此,我们揭示了下游基因转录的直接幅度依赖性。总的来说,这些结果表明通过耦合振荡器协同作用来控制振荡系统的新途径。

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