Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, GA, USA; Department of Computer Science, Georgia State University, Atlanta, GA, USA.
Tri-Institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, GA, USA; School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA, USA.
Comput Biol Med. 2023 Jul;161:107005. doi: 10.1016/j.compbiomed.2023.107005. Epub 2023 May 3.
Alzheimer's Disease (AZD) is a neurodegenerative disease for which there is now no known effective treatment. Mild cognitive impairment (MCI) is considered a precursor to AZD and affects cognitive abilities. Patients with MCI have the potential to recover cognitive health, can remain mildly cognitively impaired indefinitely or eventually progress to AZD. Identifying imaging-based predictive biomarkers for disease progression in patients presenting with evidence of very mild/questionable MCI (qMCI) can play an important role in triggering early dementia intervention. Dynamic functional network connectivity (dFNC) estimated from resting-state functional magnetic resonance imaging (rs-fMRI) has been increasingly studied in brain disorder diseases. In this work, employing a recent developed a time-attention long short-term memory (TA-LSTM) network to classify multivariate time series data. A gradient-based interpretation framework, transiently-realized event classifier activation map (TEAM) is introduced to localize the group-defining "activated" time intervals over the full time series and generate the class difference map. To test the trustworthiness of TEAM, we did a simulation study to validate the model interpretative power of TEAM. We then applied this simulation-validated framework to a well-trained TA-LSTM model which predicts the progression or recovery from questionable/mild cognitive impairment (qMCI) subjects after three years from windowless wavelet-based dFNC (WWdFNC). The FNC class difference map points to potentially important predictive dynamic biomarkers. Moreover, the more highly time-solved dFNC (WWdFNC) achieves better performance in both TA-LSTM and a multivariate CNN model than dFNC based on windowed correlations between timeseries, suggesting that better temporally resolved measures can enhance the model's performance.
阿尔茨海默病(AZD)是一种神经退行性疾病,目前尚无已知的有效治疗方法。轻度认知障碍(MCI)被认为是 AZD 的前兆,会影响认知能力。患有 MCI 的患者有可能恢复认知健康,可以无限期地保持轻度认知障碍,也可以最终发展为 AZD。在出现非常轻度/可疑 MCI(qMCI)证据的患者中,识别基于影像学的疾病进展预测生物标志物可以在触发早期痴呆干预方面发挥重要作用。静息态功能磁共振成像(rs-fMRI)估计的动态功能网络连接(dFNC)已在脑疾病中得到越来越多的研究。在这项工作中,我们采用了最近开发的基于时间注意力的长短期记忆(TA-LSTM)网络来对多元时间序列数据进行分类。引入基于梯度的解释框架——瞬时实现事件分类器激活图(TEAM),以定位整个时间序列上的群组定义的“激活”时间间隔,并生成类别差异图。为了测试 TEAM 的可信度,我们进行了一项模拟研究,以验证 TEAM 的模型解释能力。然后,我们将这个经过模拟验证的框架应用于一个经过良好训练的 TA-LSTM 模型,该模型可以预测可疑/轻度认知障碍(qMCI)患者在无窗小波 dFNC(WWdFNC)后三年的进展或恢复情况。FNC 类别差异图指向潜在的重要预测性动态生物标志物。此外,与基于时间序列之间的窗口相关的 dFNC 相比,时间分辨率更高的 dFNC(WWdFNC)在 TA-LSTM 和多元 CNN 模型中都能实现更好的性能,这表明更好的时间分辨率测量可以提高模型的性能。