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利用中红外光谱成像和深度学习进行卵巢癌组织亚型分类。

Leveraging mid-infrared spectroscopic imaging and deep learning for tissue subtype classification in ovarian cancer.

机构信息

University of Houston, 4226 Martin Luther King Boulevard, N308 Engineering Building 1, Houston, TX, 77584, USA.

Rice University, Houston, TX, USA.

出版信息

Analyst. 2023 Jun 12;148(12):2699-2708. doi: 10.1039/d2an01035f.

Abstract

Mid-infrared spectroscopic imaging (MIRSI) is an emerging class of label-free techniques being leveraged for digital histopathology. Modern histopathologic identification of ovarian cancer involves tissue staining followed by morphological pattern recognition. This process is time-consuming and subjective and requires extensive expertise. This paper presents the first label-free, quantitative, and automated histological recognition of ovarian tissue subtypes using a new MIRSI technique. This optical photothermal infrared (O-PTIR) imaging technique provides a 10× enhancement in spatial resolution relative to prior instruments. It enables sub-cellular spectroscopic investigation of tissue at biochemically important fingerprint wavelengths. We demonstrate that the enhanced resolution of sub-cellular features, combined with spectroscopic information, enables reliable classification of ovarian cell subtypes achieving a classification accuracy of 0.98. Moreover, we present a statistically robust analysis from 78 patient samples with over 60 million data points. We show that sub-cellular resolution from five wavenumbers is sufficient to outperform state-of-the-art diffraction-limited techniques with up to 235 wavenumbers. We also propose two quantitative biomarkers based on the relative quantities of epithelia and stroma that exhibit efficacy in early cancer diagnosis. This paper demonstrates that combining deep learning with intrinsic biochemical MIRSI measurements enables quantitative evaluation of cancerous tissue, improving the rigor and reproducibility of histopathology.

摘要

中红外光谱成象(MIRSI)是一种新兴的无标记技术,正被用于数字组织病理学。现代组织病理学对卵巢癌的识别涉及组织染色,然后进行形态模式识别。这个过程既耗时又主观,需要广泛的专业知识。本文提出了一种使用新的 MIRSI 技术对卵巢组织亚型进行无标记、定量和自动组织学识别的方法。这种光学光热红外(O-PTIR)成像技术与以前的仪器相比,空间分辨率提高了 10 倍。它能够在生物化学上重要的指纹波长对组织进行亚细胞光谱研究。我们证明,亚细胞特征的增强分辨率与光谱信息相结合,能够实现卵巢细胞亚型的可靠分类,分类准确率达到 0.98。此外,我们还对来自 78 名患者的 78 个样本进行了统计稳健的分析,共有超过 6000 万个数据点。我们表明,仅从五个波数就可以达到亚细胞分辨率,其性能优于具有多达 235 个波数的最先进的衍射受限技术。我们还提出了两个基于上皮和基质相对数量的定量生物标志物,它们在早期癌症诊断中具有疗效。本文证明,将深度学习与内在的生化 MIRSI 测量相结合,可以实现对癌组织的定量评估,从而提高组织病理学的严格性和可重复性。

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