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基于生物信息学分析银屑病与代谢综合征的潜在共同发病机制

Bioinformatic Analysis of the Potential Common Pathogenic Mechanisms for Psoriasis and Metabolic Syndrome.

机构信息

Beijing University of Chinese Medicine, Beijing, 100029, China.

Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing, 100700, China.

出版信息

Inflammation. 2023 Aug;46(4):1381-1395. doi: 10.1007/s10753-023-01815-4. Epub 2023 May 24.

Abstract

The pathogeneses of psoriasis and metabolic syndrome are closely related; however, the underlying biological mechanisms are yet to be clarified. A psoriasis training set was downloaded from the Gene Expression Omnibus database and analyzed to identify the differentially expressed genes (|logFC|> 1 and adjust P < 0.05). Differentially expressed genes for metabolic syndrome were obtained from the GeneCards, Online Mendelian Inheritance in Man, and DisGeNET databases, and crosstalk genes were obtained for multiple enrichment analysis after identifying the disease intersection. Characteristic crosstalk genes were screened using the least absolute shrinkage and selection operator regression model and random forest tree model, and the genes with area under the receiver operating characteristic curve > 0.7 were selected for validation by the two validation sets. Differential analyses of immune cell infiltration were performed on psoriasis lesion and control samples using the CIBERSORT and ImmuCellAI methods, and correlation analyses were performed between the screened signature crosstalk genes and immune cell infiltration. Significant crosstalk genes were analyzed based on the psoriasis area and severity index and on the responses to biological agents. We found five signature genes (NLRX1, KYNU, ABCC1, BTC, and SERPINB4) were screened based on two machine learning algorithms, and NLRX1 was validated. The infiltration of multiple immune cells in psoriatic lesions and non-lesions was associated with NLRX1 expression. NLRX1 was found to be associated with psoriasis severity and response rate after the use of biologics. NLRX1 could be a significant crosstalk gene for psoriasis and metabolic syndrome.

摘要

银屑病和代谢综合征的发病机制密切相关,但潜在的生物学机制尚不清楚。从基因表达综合数据库中下载银屑病训练集并进行分析,以确定差异表达基因(|logFC|>1,调整 P<0.05)。代谢综合征的差异表达基因从基因卡片、在线孟德尔遗传和 DisGeNET 数据库中获得,在识别疾病交集后进行多重富集分析获得共话基因。使用最小绝对收缩和选择算子回归模型和随机森林树模型筛选特征共话基因,并使用两个验证集对面积大于 0.7 的基因进行验证。使用 CIBERSORT 和 ImmuCellAI 方法对银屑病病变和对照样本进行免疫细胞浸润的差异分析,并对筛选的特征共话基因与免疫细胞浸润进行相关性分析。根据银屑病面积和严重程度指数以及对生物制剂的反应对显著共话基因进行分析。我们发现基于两种机器学习算法筛选出了五个特征基因(NLRX1、KYNU、ABCC1、BTC 和 SERPINB4),并验证了 NLRX1。银屑病病变和非病变中多种免疫细胞的浸润与 NLRX1 的表达有关。NLRX1 与生物制剂治疗后的银屑病严重程度和反应率有关。NLRX1 可能是银屑病和代谢综合征的重要共话基因。

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