• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于生物信息学分析银屑病与代谢综合征的潜在共同发病机制

Bioinformatic Analysis of the Potential Common Pathogenic Mechanisms for Psoriasis and Metabolic Syndrome.

机构信息

Beijing University of Chinese Medicine, Beijing, 100029, China.

Dongzhimen Hospital, Beijing University of Chinese Medicine, Beijing, 100700, China.

出版信息

Inflammation. 2023 Aug;46(4):1381-1395. doi: 10.1007/s10753-023-01815-4. Epub 2023 May 24.

DOI:10.1007/s10753-023-01815-4
PMID:37222907
Abstract

The pathogeneses of psoriasis and metabolic syndrome are closely related; however, the underlying biological mechanisms are yet to be clarified. A psoriasis training set was downloaded from the Gene Expression Omnibus database and analyzed to identify the differentially expressed genes (|logFC|> 1 and adjust P < 0.05). Differentially expressed genes for metabolic syndrome were obtained from the GeneCards, Online Mendelian Inheritance in Man, and DisGeNET databases, and crosstalk genes were obtained for multiple enrichment analysis after identifying the disease intersection. Characteristic crosstalk genes were screened using the least absolute shrinkage and selection operator regression model and random forest tree model, and the genes with area under the receiver operating characteristic curve > 0.7 were selected for validation by the two validation sets. Differential analyses of immune cell infiltration were performed on psoriasis lesion and control samples using the CIBERSORT and ImmuCellAI methods, and correlation analyses were performed between the screened signature crosstalk genes and immune cell infiltration. Significant crosstalk genes were analyzed based on the psoriasis area and severity index and on the responses to biological agents. We found five signature genes (NLRX1, KYNU, ABCC1, BTC, and SERPINB4) were screened based on two machine learning algorithms, and NLRX1 was validated. The infiltration of multiple immune cells in psoriatic lesions and non-lesions was associated with NLRX1 expression. NLRX1 was found to be associated with psoriasis severity and response rate after the use of biologics. NLRX1 could be a significant crosstalk gene for psoriasis and metabolic syndrome.

摘要

银屑病和代谢综合征的发病机制密切相关,但潜在的生物学机制尚不清楚。从基因表达综合数据库中下载银屑病训练集并进行分析,以确定差异表达基因(|logFC|>1,调整 P<0.05)。代谢综合征的差异表达基因从基因卡片、在线孟德尔遗传和 DisGeNET 数据库中获得,在识别疾病交集后进行多重富集分析获得共话基因。使用最小绝对收缩和选择算子回归模型和随机森林树模型筛选特征共话基因,并使用两个验证集对面积大于 0.7 的基因进行验证。使用 CIBERSORT 和 ImmuCellAI 方法对银屑病病变和对照样本进行免疫细胞浸润的差异分析,并对筛选的特征共话基因与免疫细胞浸润进行相关性分析。根据银屑病面积和严重程度指数以及对生物制剂的反应对显著共话基因进行分析。我们发现基于两种机器学习算法筛选出了五个特征基因(NLRX1、KYNU、ABCC1、BTC 和 SERPINB4),并验证了 NLRX1。银屑病病变和非病变中多种免疫细胞的浸润与 NLRX1 的表达有关。NLRX1 与生物制剂治疗后的银屑病严重程度和反应率有关。NLRX1 可能是银屑病和代谢综合征的重要共话基因。

相似文献

1
Bioinformatic Analysis of the Potential Common Pathogenic Mechanisms for Psoriasis and Metabolic Syndrome.基于生物信息学分析银屑病与代谢综合征的潜在共同发病机制
Inflammation. 2023 Aug;46(4):1381-1395. doi: 10.1007/s10753-023-01815-4. Epub 2023 May 24.
2
Machine learning-based screening for biomarkers of psoriasis and immune cell infiltration.基于机器学习的银屑病生物标志物和免疫细胞浸润筛查。
Eur J Dermatol. 2023 Apr 1;33(2):147-156. doi: 10.1684/ejd.2023.4453.
3
Identification of Immune-Associated Genes in Diagnosing Aortic Valve Calcification With Metabolic Syndrome by Integrated Bioinformatics Analysis and Machine Learning.基于集成生物信息学分析和机器学习的代谢综合征诊断主动脉瓣钙化相关免疫基因的鉴定。
Front Immunol. 2022 Jul 4;13:937886. doi: 10.3389/fimmu.2022.937886. eCollection 2022.
4
Identification of ADAM23 as a Potential Signature for Psoriasis Using Integrative Machine-Learning and Experimental Verification.利用综合机器学习和实验验证鉴定ADAM23作为银屑病的潜在标志物
Int J Gen Med. 2023 Dec 22;16:6051-6064. doi: 10.2147/IJGM.S441262. eCollection 2023.
5
Bioinformatic analysis of underlying mechanisms of Kawasaki disease via Weighted Gene Correlation Network Analysis (WGCNA) and the Least Absolute Shrinkage and Selection Operator method (LASSO) regression model.通过加权基因共表达网络分析(WGCNA)和最小绝对收缩与选择算子法(LASSO)回归模型对川崎病潜在机制的生物信息学分析
BMC Pediatr. 2023 Feb 24;23(1):90. doi: 10.1186/s12887-023-03896-4.
6
Identification of potential crucial genes shared in psoriasis and ulcerative colitis by machine learning and integrated bioinformatics.基于机器学习和综合生物信息学方法鉴定银屑病和溃疡性结肠炎中共同的潜在关键基因。
Skin Res Technol. 2024 Feb;30(2):e13574. doi: 10.1111/srt.13574.
7
Identification of diagnostic gene biomarkers and immune infiltration in patients with diabetic kidney disease using machine learning strategies and bioinformatic analysis.运用机器学习策略和生物信息学分析鉴定糖尿病肾病患者的诊断基因生物标志物及免疫浸润情况。
Front Med (Lausanne). 2022 Sep 29;9:918657. doi: 10.3389/fmed.2022.918657. eCollection 2022.
8
Renal tubular gen e biomarkers identification based on immune infiltrates in focal segmental glomerulosclerosis.基于免疫浸润物的局灶节段性肾小球硬化症肾小管基因生物标志物鉴定。
Ren Fail. 2022 Dec;44(1):966-986. doi: 10.1080/0886022X.2022.2081579.
9
Identification of TYR, TYRP1, DCT and LARP7 as related biomarkers and immune infiltration characteristics of vitiligo via comprehensive strategies.通过综合策略鉴定 TYR、TYRP1、DCT 和 LARP7 作为相关生物标志物及白癜风的免疫浸润特征。
Bioengineered. 2021 Dec;12(1):2214-2227. doi: 10.1080/21655979.2021.1933743.
10
The shared biomarkers and pathways of systemic lupus erythematosus and metabolic syndrome analyzed by bioinformatics combining machine learning algorithm and single-cell sequencing analysis.基于生物信息学结合机器学习算法和单细胞测序分析,系统性红斑狼疮和代谢综合征的共享生物标志物和通路。
Front Immunol. 2022 Oct 19;13:1015882. doi: 10.3389/fimmu.2022.1015882. eCollection 2022.

引用本文的文献

1
The Association Between Life's Essential 8 and Psoriasis in American Adults: A Cross-Sectional NHANES Study.美国成年人生命必需的八项指标与银屑病之间的关联:一项横断面美国国家健康与营养检查调查研究
Clin Cosmet Investig Dermatol. 2024 Nov 12;17:2555-2563. doi: 10.2147/CCID.S476594. eCollection 2024.
2
The circadian syndrome is a better predictor for psoriasis than the metabolic syndrome via an explainable machine learning method - the NHANES survey during 2005-2006 and 2009-2014.通过可解释的机器学习方法,昼夜节律紊乱综合征比代谢综合征更能预测银屑病——基于 2005-2006 年和 2009-2014 年 NHANES 调查。
Front Endocrinol (Lausanne). 2024 Jun 26;15:1379130. doi: 10.3389/fendo.2024.1379130. eCollection 2024.
3

本文引用的文献

1
Psoriasis and metabolic syndrome: implications for the management and treatment of psoriasis.银屑病与代谢综合征:对银屑病治疗与管理的启示。
J Eur Acad Dermatol Venereol. 2022 Jun;36(6):797-806. doi: 10.1111/jdv.18044. Epub 2022 Mar 14.
2
NOD-like receptors in autoimmune diseases.NOD 样受体与自身免疫性疾病。
Acta Pharmacol Sin. 2021 Nov;42(11):1742-1756. doi: 10.1038/s41401-020-00603-2. Epub 2021 Feb 15.
3
Focusing on the Cell Type Specific Regulatory Actions of NLRX1.聚焦 NLRX1 的细胞类型特异性调控作用。
Discovering KYNU as a feature gene in hidradenitis suppurativa.
发现 KYNU 是化脓性汗腺炎的一个特征基因。
Int J Immunopathol Pharmacol. 2023 Jan-Dec;37:3946320231216317. doi: 10.1177/03946320231216317.
Int J Mol Sci. 2021 Jan 28;22(3):1316. doi: 10.3390/ijms22031316.
4
Behind the Scenes: Nod-Like Receptor X1 Controls Inflammation and Metabolism.幕后故事:核苷酸结合寡聚化结构域样受体X1调控炎症与代谢
Front Cell Infect Microbiol. 2020 Dec 4;10:609812. doi: 10.3389/fcimb.2020.609812. eCollection 2020.
5
Role of Innate Immune Cells in Psoriasis.固有免疫细胞在银屑病中的作用。
Int J Mol Sci. 2020 Sep 9;21(18):6604. doi: 10.3390/ijms21186604.
6
Regulating the Polarization of Macrophages: A Promising Approach to Vascular Dermatosis.调控巨噬细胞极化:一种有前途的血管皮肤病治疗方法。
J Immunol Res. 2020 Jul 28;2020:8148272. doi: 10.1155/2020/8148272. eCollection 2020.
7
Comparison of Th1/Th2 and Treg/Th17 ratios between wet and dry cupping therapies in Persian medicine.波斯医学中湿拔罐疗法与干拔罐疗法之间Th1/Th2和Treg/Th17比率的比较。
Avicenna J Phytomed. 2020 Jan-Feb;10(1):24-34.
8
Activated NLR family pyrin domain containing 3 (NLRP3) inflammasome in keratinocytes promotes cutaneous T-cell response in patients with vitiligo.角质形成细胞中激活的 NLR 家族富含pyrin 结构域的 3(NLRP3)炎性小体促进白癜风患者的皮肤 T 细胞反应。
J Allergy Clin Immunol. 2020 Feb;145(2):632-645. doi: 10.1016/j.jaci.2019.10.036. Epub 2019 Nov 19.
9
Ginsenoside Rg1 protects mice against streptozotocin-induced type 1 diabetic by modulating the NLRP3 and Keap1/Nrf2/HO-1 pathways.人参皂苷 Rg1 通过调节 NLRP3 和 Keap1/Nrf2/HO-1 通路保护小鼠免受链脲佐菌素诱导的 1 型糖尿病。
Eur J Pharmacol. 2020 Jan 5;866:172801. doi: 10.1016/j.ejphar.2019.172801. Epub 2019 Nov 16.
10
NLRX1 Regulation Following Acute Mitochondrial Injury.NLRX1 在急性线粒体损伤后的调控。
Front Immunol. 2019 Oct 24;10:2431. doi: 10.3389/fimmu.2019.02431. eCollection 2019.