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属名. 新种.,一种从藻体(植物)圈中分离到的新型细菌。

gen. nov., sp. nov., a novel bacterium isolated from phycosphere.

机构信息

Biology Department and Institute of Marine Sciences, College of Science, Shantou University, Shantou, 515063, PR China.

Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou, 515063, PR China.

出版信息

Int J Syst Evol Microbiol. 2023 May;73(5). doi: 10.1099/ijsem.0.005904.

Abstract

A novel strain of a member of the family was isolated from the phycosphere of a diatom and designated as LMIT007. LMIT007 could form milk-white, opaque, circular and smooth colonies on 2216E marine agar. LMIT007 cells were around 1.0-1.8 µm long, 0.8-1.8 µm wide, round or oval shaped and had polar flagella but were non-motile. Optimum conditions for growth were 25 °C, pH 7.0 and 6 % (w/v) NaCl. The results of 16S rRNA gene-based analysis indicated that LMIT007 had the highest similarity with the type strains JC2043 (95.95 %), JW12 (95.60 %) and KCTC 22164 (94.21 %). Furthermore, the results of phylogenetic analysis based on 16S rRNA gene sequences and of phylogenomic analysis indicated that LMIT007 could be clustered into the family but formed a separate branch. The genome size of the strain was 2.95 Mbp and the DNA G+C content was 41.6 %. The average nucleotide identity (ANI) values of orthologous genes between LMIT007 and species of other closely related genera within the family ranged from 66.9 to 69.2 %, and the average amino acid identity (AAI) values ranged from 60.0 to 65.7 %. The main respiratory quinone was ubiquinone-8. The major fatty acids were summed feature 3 (Cω7 / Cω6) and C. The polar lipid profile contain phosphatidylethanolamine, phosphatidylglycerol, aminolipid, two phospholipid and an unknown polar lipid. On the basis of the results of the polyphasic analysis, strain LMIT007 is suggested to represent a novel genus and species within the family , for which the name gen. nov., sp. nov. is proposed. The type strain is LMIT007 (=MCCC 1K08161=KCTC 92597).

摘要

从硅藻的藻际中分离到一株家族的新菌株,并将其命名为 LMIT007。LMIT007 在 2216E 海洋琼脂上可形成乳白色、不透明、圆形和光滑的菌落。LMIT007 细胞长约 1.0-1.8μm,宽 0.8-1.8μm,呈圆形或椭圆形,具有极性鞭毛但不运动。生长的最佳条件是 25°C、pH7.0 和 6%(w/v)NaCl。16S rRNA 基因分析结果表明,LMIT007 与模式菌株 JC2043(95.95%)、JW12(95.60%)和 KCTC 22164(94.21%)的相似度最高。此外,基于 16S rRNA 基因序列的系统发育分析和系统基因组分析结果表明,LMIT007 可聚类到家族中,但形成一个单独的分支。该菌株的基因组大小为 2.95 Mbp,DNA G+C 含量为 41.6%。LMIT007 与家族中其他密切相关属的种之间的同源基因的平均核苷酸同一性(ANI)值为 66.9-69.2%,平均氨基酸同一性(AAI)值为 60.0-65.7%。主要呼吸醌为泛醌-8。主要脂肪酸为 Cω7 / Cω6 总和 C。极性脂谱包含磷脂酰乙醇胺、磷脂酰甘油、胺脂、两种磷脂和一种未知极性脂。基于多相分析的结果,建议菌株 LMIT007 代表家族中的一个新属和新种,因此建议使用新属名和新种名。模式株为 LMIT007(=MCCC 1K08161=KCTC 92597)。

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