从自发发酵物中分离得到的植物乳杆菌DMR09的基因组草图序列
Draft Genome Sequence of Lactiplantibacillus plantarum DMR09, Isolated from Spontaneously Fermented .
作者信息
Tirwa Ranjan Kaushal, Bhattarai Anil, Tamang Buddhiman
机构信息
Department of Microbiology, Nar Bahadur Bhandari Degree College, Tadong, Sikkim, India.
Department of Medical Biotechnology, Sikkim Manipal Institute of Medical Sciences, Sikkim Manipal University, Tadong, Sikkim, India.
出版信息
Microbiol Resour Announc. 2023 Jun 20;12(6):e0109722. doi: 10.1128/mra.01097-22. Epub 2023 May 30.
Abstract
The draft genome sequence of Lactiplantibacillus plantarum DMR09, which was isolated from spontaneously fermented homemade cow , was analyzed. The genome profile of L. plantarum DMR09 revealed 3,315,630 bp and a GC content of 44.5%, with 3,036 protein-encoding genes, 72 rRNA genes, and 65 tRNA genes.
摘要
对从自发发酵的自制牛奶中分离出的植物乳杆菌DMR09的基因组序列草图进行了分析。植物乳杆菌DMR09的基因组图谱显示其大小为3,315,630 bp，GC含量为44.5%，有3,036个蛋白质编码基因、72个rRNA基因和65个tRNA基因。
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Microbiol Resour Announc. 2022 Dec 15;11(12):e0086222. doi: 10.1128/mra.00862-22. Epub 2022 Nov 3.
2
tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes.tRNAscan-SE 2.0：改进的 tRNA 基因检测和功能分类。
Nucleic Acids Res. 2021 Sep 20;49(16):9077-9096. doi: 10.1093/nar/gkab688.
3
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4
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
5
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
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6
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Antimicrob Agents Chemother. 2014 Jul;58(7):3895-903. doi: 10.1128/AAC.02412-14. Epub 2014 Apr 28.
7
QUAST: quality assessment tool for genome assemblies.QUAST：基因组组装质量评估工具。
Bioinformatics. 2013 Apr 15;29(8):1072-5. doi: 10.1093/bioinformatics/btt086. Epub 2013 Feb 19.
8
Human mucosal in vivo transcriptome responses to three lactobacilli indicate how probiotics may modulate human cellular pathways.人类黏膜体内转录组对三种乳杆菌的反应表明益生菌可能如何调节人体细胞途径。
Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4562-9. doi: 10.1073/pnas.1000079107. Epub 2010 Sep 7.
9
The Sequence Alignment/Map format and SAMtools.序列比对/映射格式和 SAMtools。
Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.
10
Fast and accurate short read alignment with Burrows-Wheeler transform.使用Burrows-Wheeler变换进行快速准确的短读比对。
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