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本文引用的文献

1
Whole genome sequence data of IMI 507027.IMI 507027的全基因组序列数据。
Data Brief. 2022 Mar 6;42:108025. doi: 10.1016/j.dib.2022.108025. eCollection 2022 Jun.
2
EFSA statement on the requirements for whole genome sequence analysis of microorganisms intentionally used in the food chain.欧洲食品安全局关于食物链中有意使用的微生物全基因组序列分析要求的声明。
EFSA J. 2021 Jul 28;19(7):e06506. doi: 10.2903/j.efsa.2021.6506. eCollection 2021 Jul.
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Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.关于将基因组数据用于原核生物分类学的拟议最低标准。
Int J Syst Evol Microbiol. 2018 Jan;68(1):461-466. doi: 10.1099/ijsem.0.002516.
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NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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Mash: fast genome and metagenome distance estimation using MinHash.Mash:使用MinHash进行快速的基因组和宏基因组距离估计。
Genome Biol. 2016 Jun 20;17(1):132. doi: 10.1186/s13059-016-0997-x.
6
OrthoANI: An improved algorithm and software for calculating average nucleotide identity.OrthoANI:一种用于计算平均核苷酸一致性的改进算法及软件。
Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9.

IMI 507028的基因组序列数据。

Genome sequence data of IMI 507028.

作者信息

Nikodinoska Ivana, Makkonen Jenny, Blande Daniel, Moran Colm

机构信息

Alltech European Headquarters, Sarney, Summerhill Road, Co. Meath, Dunboyne, Ireland.

Biosafe - Biological Safety Solutions Ltd, Microkatu 1M, Kuopio, Finland.

出版信息

Data Brief. 2022 Apr 19;42:108190. doi: 10.1016/j.dib.2022.108190. eCollection 2022 Jun.

DOI:10.1016/j.dib.2022.108190
PMID:35515993
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9062256/
Abstract

Here, we report the genome sequencing data for the fermented milk isolate, () IMI 507028. The Bioproject, SRA, and GenBank data were deposited at NCBI under accession numbers PRJNA801616, SRR18323693, and JAKMAX000000000, respectively. The size of the genome was 3,231,321 bp, with a GC% of 44.52. Before sequence trimming, the genome contained 40 contigs, in which 35 contigs were annotated, revealing 2937 coding sequences out of 3052 total genes. The strain was identified as with an average nucleotide identity (ANI) value of 99.9922% between IMI 507028 and JDM1. Genes related to antimicrobial resistance or pathogenic factors were not found during screening.

摘要

在此,我们报告了发酵乳分离株()IMI 507028的基因组测序数据。生物项目、序列读取档案库和基因银行数据分别以登录号PRJNA801616、SRR18323693和JAKMAX000000000保存在美国国立生物技术信息中心。基因组大小为3,231,321碱基对,GC含量为44.52%。在序列修剪之前,基因组包含40个重叠群,其中35个重叠群已注释,在总共3052个基因中揭示了2937个编码序列。该菌株被鉴定为,IMI 507028与JDM1之间的平均核苷酸同一性(ANI)值为99.9922%。在筛选过程中未发现与抗微生物抗性或致病因素相关的基因。