Nantong Hospital to Nanjing University of Chinese Medicine, Nantong, Jiangsu, China.
Turk J Gastroenterol. 2023 Jul;34(7):700-713. doi: 10.5152/tjg.2023.22316.
BACKGROUND/AIMS: Based on the gene expression profiles of gastric epithelial tissue at different stages of Helicobacter pylori-infected gastritis, key long noncoding RNAs and genes in the development of Helicobacter pylori infection-induced gastritis were screened to provide a basis for early diagnosis and treatment. MATERIALS AND METHODS: We downloaded 2 sets of sample data from the database, including gastric epithelial tissue samples from gastritis patients from Bhutan and Dominican, and screened mRNAs in the differentially expressed RNAs of the 2 regions. Mfuzz clustering algorithm was used to screen RNAs related to the 3 stages of chronic gastritis. The competing endogenous RNA (ceRNA) regulation network was constructed, and the selected key RNAs were verified. Samples from Bhutan and Dominican were subdivided into the chronic gastritis/ normal comparison groups, and the differentially expressed RNAs were screened to obtain 1067 overlapping RNAs, containing 21 long noncoding RNAs and 1046 mRNAs. RESULTS: Thirty-eight significant gene ontology functional nodes and 6 expression pattern clusters were obtained. Two ceRNA regulatory networks were constructed, and 4 shared miRNAs (hsa-miR-320b, hsa-miR-320c, hsa-miR-320d, and hsa-miR-155-5p) were obtained. Eleven important long noncoding RNAs (AFAP1-AS1, MIR155HG, LINC00472, and FAM201A) and mRNAs (CASP10, SLC26A2, TRIB1, BMP2K, SCAMP1, TNKS1BP1, and MBOAT2) regulated by these 4 miRNAs were obtained. These results indicated that Helicobacter pylori infection had a certain influence on the development of gastritis. CONCLUSIONS: The 11 key RNAs can provide a target for the early diagnosis and treatment of chronic gastritis following Helicobacter pylori infection.
背景/目的:基于不同阶段幽门螺杆菌感染性胃炎胃上皮组织的基因表达谱,筛选出幽门螺杆菌感染性胃炎发展过程中的关键长链非编码 RNA 和基因,为早期诊断和治疗提供依据。
材料和方法:从数据库中下载了 2 组样本数据,包括不丹和多米尼加胃炎患者的胃上皮组织样本,并筛选了这 2 个区域差异表达 RNA 中的 mRNAs。使用 Mfuzz 聚类算法筛选与慢性胃炎 3 个阶段相关的 RNA。构建竞争内源性 RNA(ceRNA)调控网络,并对选定的关键 RNA 进行验证。将不丹和多米尼加的样本进一步分为慢性胃炎/正常对照组,筛选差异表达的 RNA,获得 1067 个重叠 RNA,包含 21 个长链非编码 RNA 和 1046 个 mRNAs。
结果:获得了 38 个显著的基因本体功能节点和 6 个表达模式聚类。构建了 2 个 ceRNA 调控网络,获得了 4 个共享的 miRNA(hsa-miR-320b、hsa-miR-320c、hsa-miR-320d 和 hsa-miR-155-5p)。获得了由这 4 个 miRNA 调控的 11 个重要长链非编码 RNA(AFAP1-AS1、MIR155HG、LINC00472 和 FAM201A)和 mRNAs(CASP10、SLC26A2、TRIB1、BMP2K、SCAMP1、TNKS1BP1 和 MBOAT2)。这些结果表明,幽门螺杆菌感染对胃炎的发展有一定的影响。
结论:这 11 个关键 RNA 可为慢性胃炎早期诊断和治疗提供靶点。
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