Estupiñán Ruth Amanda, Torres de Farias Sávio, Gonçalves Evonnildo Costa, Camargo Mauricio, Cruz Schneider Maria Paula
Instituto Federal da Paraíba, Campus, João Pessoa, Paraíba, PB. CEP 58015-435, Brazil.
Programa de Pós-graduação em Ciências Biológicas (Zoologia), Departamento de Sistemática e Evolução, Universidade Federal da Paraíba, João Pessoa, PB. CEP 58051-900, Brazil.
Zookeys. 2023 Feb 22;1149:145-169. doi: 10.3897/zookeys.1149.85627. eCollection 2023.
, the third largest genus of Hylinae, has cryptic morphological species. The potential applicability of is explored to propose a robust phylogeny of . The phylogenetic potential of was evaluated using maximum parsimony, MrBayes, and maximum likelihood analysis. Comparison of polymorphic sites and topologies obtained with concatenated analysis of and other nuclear genes (, , , , , and ) allowed evaluation of the phylogenetic signal of . Mean evolutionary rates were calculated using the sequences of the mitochondrial genes and available for in GenBank. Dating of and some of its groups was performed using the RelTime method with secondary calibration. analysis revealed high values at informative sites for parsimony. The absolute values of the mean evolutionary rate were higher for mitochondrial genes than for . Dating of congruent groups for , , and revealed closer values between mitochondrial genes and slightly different values from those of . Divergence times of basal groups tended to be overestimated when mtDNA was used and were more accurate when nDNA was used. Although there is evidence of phylogenetic potential arising from concatenation of specific genes, provides well-resolved independent gene trees. These results lead to a paradigm for linking data in phylogenomics that focuses on the uniqueness of species histories and ignores the multiplicities of individual gene histories.
作为雨蛙亚科的第三大属,拥有形态隐秘的物种。本文探讨了[具体内容未给出]的潜在适用性,以提出一个稳健的[具体内容未给出]系统发育树。使用最大简约法、贝叶斯法和最大似然法分析评估了[具体内容未给出]的系统发育潜力。通过对[具体内容未给出]和其他核基因([具体基因名称未给出])的串联分析获得的多态性位点和拓扑结构的比较,使得对[具体内容未给出]的系统发育信号进行评估成为可能。利用GenBank中可获取的[具体内容未给出]的线粒体基因[具体基因名称未给出]和[具体基因名称未给出]的序列计算平均进化速率。使用RelTime方法并进行二次校准,对[具体内容未给出]及其一些类群进行了年代测定。[具体分析未给出]在简约信息位点显示出高值。线粒体基因的平均进化速率绝对值高于[具体内容未给出]。对[具体内容未给出]、[具体内容未给出]和[具体内容未给出]的一致类群进行年代测定,结果显示线粒体基因之间的值更接近,与[具体内容未给出]的值略有不同。当使用线粒体DNA时,基部类群的分歧时间往往被高估,而使用核DNA时则更准确。尽管有证据表明特定基因的串联产生了系统发育潜力,但[具体内容未给出]提供了分辨率良好的独立基因树。这些结果导致了一种系统发育基因组学中数据链接的范式,该范式关注物种历史的独特性,而忽略了单个基因历史的多样性。